BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0025.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_901797.1| probable bacteriophage tail core protein [Chrom... 60 2e-08 ref|ZP_00143171.1| Phage major tail protein [Fusobacterium nucle... 59 3e-08 dbj|BAA96856.1| tail core protein [Pectobacterium carotovorum su... 59 5e-08 ref|NP_046779.1| gpFII [Enterobacteria phage P2] >gi|33438920|re... 59 6e-08 ref|NP_839871.1| FII [Bacteriophage L-413C] >gi|30025920|gb|AAP0... 59 6e-08 >ref|NP_901797.1| probable bacteriophage tail core protein [Chromobacterium violaceum ATCC 12472] gb|AAQ59800.1| probable bacteriophage tail core protein [Chromobacterium violaceum ATCC 12472] Length = 174 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 7 RVIDYSVYLNATDYLGTATA-TLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWR 65 R+ + ++Y+N LG A LP+++ ++ K G+ G++ P+ + +KW Sbjct: 9 RITNANIYINGNSLLGRAEEIKLPDVSAIMQEHKALGMVGKIELPAG--FDKLEGEIKWN 66 Query: 66 TIEKAAAALLAPKVHTLDL--RASIQTFDTA--TSEYREVPF-KVTVRARPLGLTLGNLD 120 ++ K A ++A + L R+SI+T+ + + V F V + PLG T D Sbjct: 67 SLYKDVAKIIANPFQAVQLQARSSIETYGSQGRLQQVSLVTFLTVMFKKNPLG-TFKQHD 125 Query: 121 TAAVMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLG 171 A + ++F+ Y+K +DG E+LE+D I +V D L+ ++N+G Sbjct: 126 NA---EFASSFTATYIKQVVDGEEMLELDYMANIFRVGGEDMLSIYRSNIG 173 >ref|ZP_00143171.1| Phage major tail protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA25184.1| Phage major tail protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 169 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 4 RSERVIDYSVYLNATDYL-GTATATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLAL 62 RS + D + LN TD L G AT TLP+I + +T+ G G+ E P P AM L + Sbjct: 3 RSTIIEDAIIRLNGTDELVGVATFTLPDIEHKTETISGLGVI-EHDEPIPTAFNAMKLQI 61 Query: 63 KWRTIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTA 122 K+ K A V+ L +A+I D+ T EV + + + + + G++ A Sbjct: 62 KFMNRCKDIAFEYGSNVN-LTAKAAILVEDSETHNNDEVEAIYSFKGKRIKTSGGDIGKA 120 Query: 123 AVMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVD 161 +T FS+ Y K + G + EID YN VN D Sbjct: 121 VKNETELEFSLTYYKEEIQGKVIHEIDVYNKKAIVNGKD 159 >dbj|BAA96856.1| tail core protein [Pectobacterium carotovorum subsp. carotovorum] Length = 174 Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 14/172 (8%) Query: 7 RVIDYSVYLNATDYLGTATA-TLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWR 65 R+ + ++Y+N T+ LG A LP+I+ ++ K G+ G++ P+ + +KW Sbjct: 9 RITNANIYINGTNLLGRAQEIKLPDISMIMQEHKALGMVGKIELPA--GFDKLEGEIKWN 66 Query: 66 TIEKAAAALLAPKVHTLDL--RASIQTFDTATSEYREVPF----KVTVRARPLGLTLGNL 119 + + A A +L L R+S++ + + EVP + + PLG T Sbjct: 67 SFYREAMLAAANPYQSLALQCRSSVERYGS-QGRIEEVPLVTYMTIMFKKNPLG-TFKQH 124 Query: 120 DTAAVMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLG 171 + D ++ FS Y+K ++G ++LE+D + I V V+ L + +AN+G Sbjct: 125 ENP---DFSSAFSCTYIKQVMNGEDLLELDYLSNIFMVGGVEQLNSYRANIG 173 >ref|NP_046779.1| gpFII [Enterobacteria phage P2] ref|NP_878221.1| gpFII [Bacteriophage WPhi] sp|P22502|VPF2_BPP2 MAJOR TAIL TUBE PROTEIN (PROTEIN FII) pir||S26392 tube protein - phage P2 gb|AAD03290.1| gpFII [Enterobacteria phage P2] gb|AAN28241.1| gpFII [Bacteriophage WPhi] Length = 172 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 17/170 (10%) Query: 12 SVYLNATDYLGTA-TATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWRTIEKA 70 +V+LN Y G A + TLP++T ++ +G G+ G +AP +L+++W Sbjct: 11 NVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNG--SAPVDLGLDDDALSMEWSLGGFP 68 Query: 71 AAALL----APKVHTLDLR--ASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTAAV 124 + + A V + +R S Q DT + V +V +R R + G Sbjct: 69 DSVIWELYAATGVDAVPIRFAGSYQRDDTGET----VAVEVVMRGRQKEIDTGEGKQGE- 123 Query: 125 MDTTNNFSV--NYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLGL 172 DT + SV Y ++++DG E++EID N I KVN VD L + N+GL Sbjct: 124 -DTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >ref|NP_839871.1| FII [Bacteriophage L-413C] gb|AAP04459.1| FII [Bacteriophage L-413C] Length = 172 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 15/169 (8%) Query: 12 SVYLNATDYLGTA-TATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWR----- 65 +V+LN Y G A + TLP++T ++ +G G+ G +AP +L+++W Sbjct: 11 NVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNG--SAPVDLGLDDDALSMEWSLGGFP 68 Query: 66 --TIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTAA 123 I + AA A V + S Q DT + V +V +R R + G Sbjct: 69 DSVIWELYAATSADAV-PIRFAGSYQRDDTGET----VAVEVVMRGRQKEVDTGEGKQGE 123 Query: 124 VMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLGL 172 ++ Y K+++DG E++EID N I KVN VD L + N+GL Sbjct: 124 DTESKLPVICTYFKLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 237,225,568 Number of extensions: 8709456 Number of successful extensions: 25196 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 25194 Number of HSP's successfully gapped: 9 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)