BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0023.p (999 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832352.1| Phage protein [Bacteriophage phBC6A52] >gi|3141... 119 3e-25 ref|NP_618676.1| hypothetical protein [Methanosarcina acetivoran... 114 1e-23 ref|NP_285431.1| minor tail protein gp26-related protein [Deinoc... 109 3e-22 ref|NP_471898.1| similar to tail protein [bacteriophage bIL285] ... 106 3e-21 ref|NP_813702.1| gp43 [Bacteriophage phi-BT1] >gi|29243082|emb|C... 104 1e-20 >ref|NP_832352.1| Phage protein [Bacteriophage phBC6A52] ref|NP_852599.1| hypothetical protein [Bacteriophage phBC6A52] gb|AAP09553.1| Phage protein [Bacteriophage phBC6A52] Length = 1174 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 125/508 (24%), Positives = 232/508 (45%), Gaps = 103/508 (20%) Query: 26 FRQSVEEAEHQVQGLDQALQEMVRRGYFDTLRREVEQADDSIADAGGNVEGFGDKLKN-- 83 RQ E + V L+Q L +R Y + EV+Q + + A ++ F + L++ Sbjct: 183 LRQQTEMTDKVVHNLEQQLS-TAKRAYGEN-STEVQQLEAKLNQAKTTLKQFENSLQSVG 240 Query: 84 ------AV------KEIDFSMLNKAVEPLKAVWTAVNESSEAMA-----------QLQAE 120 AV K++D + L +A E L+ + + E +++ ++QA Sbjct: 241 RSGSQAAVGMAEINKKLDMNNLMEAAEVLQGISEKLIEMGKSIVNTAIEFDGSQRKIQAS 300 Query: 121 TGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQVLQQTG-DELEKTTQTAMTYR 179 G++ K + +++I+ + + + +G+N E++ NA+ V Q ++ DEL+ ++ +T Sbjct: 301 LGLTGKGAENLQKIAVDTWKKGFGENLEEVDNALIKVYQNMRDVPYDELQMASEDVLTLA 360 Query: 180 DVFKEDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQKGLNTSGGLLNAIEKYSVDFKKM 239 ++ D+ + + +M +FG+S+++ ++L+A GAQ+GLN S L + + +Y+ FK+ Sbjct: 361 KIYDVDLNEATRGAGQLMSQFGLSTQETFDLLAAGAQEGLNYSDELFDNLSEYAPLFKQG 420 Query: 240 GYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKNGSDSTKAAIYELFAPEQLKKFS 299 G+SA EMF +L+ G ++G+ +LD + D VK FG +++GS +L E+ +K Sbjct: 421 GFSAQEMFTILANGTKSGSYNLDYINDLVKEFGIRVQDGSKGVSEGFGDL--SEETQKV- 477 Query: 300 AALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGDSANKAMLQLQKTLGTGDTIFKGL 359 K F + GK +AA D N + LQK Sbjct: 478 ---------WKSFNE-----GKGTAA----------DVFNAVLGDLQK------------ 501 Query: 360 ADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGSQFEDMGNKAVLALGQTRNEFDMT 419 + + + ++ +LFG ++EDMG +AVL+L Sbjct: 502 --------------------MDDKVKANQIGVALFGVKWEDMGAEAVLSLNNVHGGLGDV 541 Query: 420 RQTLEEAAEIKDSTLSEQFAAMGRELQANLVIPL--------TESLMPALQGLTS---WV 468 + E ++++ +L +QF RE QA L PL + L P + G+ S W Sbjct: 542 TGRMGEMKKLQEESLGQQFQKALRETQAALE-PLGKKFAELAKDILPPIVDGVKSVMDWF 600 Query: 469 SNNKES----LMVIGLTVPAAVLATKTV 492 S E+ L+V+G A ++ T V Sbjct: 601 SKLSEADQTLLIVMGALSTAFIILTPIV 628 >ref|NP_618676.1| hypothetical protein [Methanosarcina acetivorans str. C2A] gb|AAM07156.1| hypothetical protein [Methanosarcina acetivorans str. C2A] Length = 825 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 190/435 (43%), Gaps = 78/435 (17%) Query: 41 DQALQEMVRR--GYFDTLRREVEQADDSIADAGGNVEGFGDKLKNAVKEIDFSMLNKAVE 98 D ++ E+V G TL + + I D G + G ++ +A +M + Sbjct: 3 DMSVGELVVSIIGDMKTLSQAFTKVQKEIGDVGTKFKAAGAQMSSAGS----AMTSAVTV 58 Query: 99 PLKAV---------WTAVNESSEAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFED 149 P+ A+ W + E S+ QL+A G++++E + ++E S +++ YG++ ++ Sbjct: 59 PIAAIVGSGALLVNWASDVEKSQG--QLRASLGLTAEEAERLEETSISVWKNGYGESLDE 116 Query: 150 IGNAVGAVKQVLQQTGD-ELEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAY 208 + + +++ + D ELE T A+T VF++D+ A +M+ FGIS +A Sbjct: 117 VNAGIVSIRHNMAGLADNELESVTTGALTIAQVFEQDVDEVTAAAGVLMKNFGISGTEAL 176 Query: 209 NLMAQGAQKGLNTSGGLLNAIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTV 268 + + G QKG + SG LL+ + +Y F +G S++E L AG + GA +LD V D V Sbjct: 177 DTITVGFQKGGDFSGELLDTLREYGPQFASIGLSSEEFLSTLIAGAQAGAWNLDKVGDAV 236 Query: 269 KVFGTTIKNGSDSTKAAIYELFAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALV 328 K F ++GSD+T A + +AA + Sbjct: 237 KEFNVRAQDGSDTTAAGFEAI-------------------------------GLNAADMG 265 Query: 329 GDLKSGGDSANKAMLQLQKTLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAK 388 + +GGD+A KEA + L + +P+ Q Sbjct: 266 AKIAAGGDAA----------------------------KEAYIATVTALMAMDDPMQQNI 297 Query: 389 LAGSLFGSQFEDMGNKAVLA-LGQTRNEFDMTRQTLEEAAEIKDSTLSEQFAAMGRELQA 447 +LFG+Q+ED+ ++ + A Q + D++ T E+ DS RELQA Sbjct: 298 AGVALFGTQWEDVRSQVIEASAAQIESIKDVSGATAAVTKEMDDSNPMLALTTAMRELQA 357 Query: 448 NLVIPLTESLMPALQ 462 ++ + + L+P +Q Sbjct: 358 AMLPVVQDQLIPLVQ 372 >ref|NP_285431.1| minor tail protein gp26-related protein [Deinococcus radiodurans] pir||F75605 minor tail protein gp26-related protein - Deinococcus radiodurans (strain R1) gb|AAF12240.1| minor tail protein gp26-related protein [Deinococcus radiodurans] Length = 1225 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 143/537 (26%), Positives = 226/537 (42%), Gaps = 75/537 (13%) Query: 51 GYFDTLRREVEQADDSIADAGGNV-EGFGDKLKNAVKEIDFSMLNKAVEPLKAVWTAVNE 109 G FD R + + + DAG GFGDK + +L L TAV Sbjct: 20 GRFDEFERRLAEVESGAGDAGERAGSGFGDKFSAGLTIAAGGLL-----ALTGAVTAVVG 74 Query: 110 SSEAMAQ--------LQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVK-QV 160 S+ +AQ QA+ G S +E +++ ++ ++ N+ + + G AV V+ +V Sbjct: 75 STVGLAQEAAQNVNDFQAKLGASREEAEKLGTVAEQVFGDNWTGSLSEAGEAVANVRREV 134 Query: 161 LQQTGDELEKTTQTAMTYRDVFKED---ITGSLQAVDSMMQKFGISSEQAYNLMAQGAQK 217 T +EL T + + F E+ + S+QAV MQ G+ +++A + +A G Q+ Sbjct: 135 KGLTDEELAGVTGATVAIAENFDEEQQRVAASVQAV---MQATGVGAKEATDFIAAGFQR 191 Query: 218 GLNTSGGLLNAIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKN 277 GLNTSG L+ + +Y F+K AD++F +L G + GA D +AD K FG T+ + Sbjct: 192 GLNTSGDFLDTLMEYGPQFEKSKIGADQLFSMLETGAQKGALGTDKIADAFKEFGLTVTD 251 Query: 278 GSDSTKAAIYELFAPEQLKKFSAALVSGGTKSKEFAQLV-----KVAGKA-----SAAAL 327 SD++ EL K A + SG + E +LV +V G A SAA Sbjct: 252 VSDASTETYAELGLSH--SKIVADINSGKMTTAEAFELVTKKLNEVKGVADKTRISAAVF 309 Query: 328 VG---DLKSGGDSANKAMLQLQKTLGTGDTI------FKGLADGSMTGKEAMEQVILKLK 378 G D+ +G + +L+ G D + F LA+G + K++ Sbjct: 310 GGAGEDMAAGLAGIDLTKTKLKDLQGATDALNAKYNNFGSLAEG----------MWRKVQ 359 Query: 379 GIKEPIHQAKLAGSLFGSQFEDMGNKAVLALGQTRNEFDMTRQTLEEAAEIKDST-LSEQ 437 P+ G + M N+AV L + FD Q L IK ++Q Sbjct: 360 VALLPV----------GKELLGMANEAVPYLTKA---FDQVGQKL--PGMIKSGIETAKQ 404 Query: 438 FAAMGRELQANLVIPLTESLMPALQGLTSWVSNNKESLMVIGLTVPAAVLATKTVKIVQE 497 F A + N V P E+ + +Q L+S++ NKE L+ + V A A + Sbjct: 405 FGATAVNVY-NSVKPAIETTVVTVQKLSSFIERNKEVLIPLTAAVGAGAAAFGLYRAGVV 463 Query: 498 FSKIVTXXXXXXXXXXXXXXXXXXX-----TNPVGIAVAGVGLLT-AGVIAYKKHQE 548 + T P+G+A+A +GLL AGV Y+ E Sbjct: 464 AVTVAKAAWTVATTAATTASVALRAAIAFLTGPIGLAIAAIGLLVGAGVALYRNWDE 520 >ref|NP_471898.1| similar to tail protein [bacteriophage bIL285] [Listeria innocua] pir||AC1753 tail protein [bacteriophage bIL285] homolog lin2568 [imported] - Listeria innocua (strain Clip11262) emb|CAC97795.1| lin2568 [Listeria innocua] Length = 1093 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 3/194 (1%) Query: 94 NKAVEPLKAVWTAVNESSEAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNA 153 +K +E KA + + ++ A + G+ KE K+ K+ + Y+ ++E+ G A Sbjct: 250 DKVIELGKASFDSALDADAATGKFNKNFGLVGKEAKKTKDTIVDFYNTGLVDSYEEAGEA 309 Query: 154 VGAVKQVLQQ-TGDELEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAYNLMA 212 + K+ L +LE T+ A+ + F D+ +L+ +++M+ +G+S+EQ+++LM Sbjct: 310 LTQTKRQLNDLNSTDLESVTEKALAFSKTFDSDMNETLRGANALMETYGLSAEQSFDLMT 369 Query: 213 QGAQKGLNTSGGLLNAIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFG 272 GAQ GLN + L + + +YS FK+ GYSA MFE L AG+++GA +LD V D VK FG Sbjct: 370 VGAQNGLNKTDELGDNLAEYSGQFKQNGYSAQGMFETLEAGLDSGAYNLDKVNDLVKEFG 429 Query: 273 TTIKNGSDSTKAAI 286 I+ DS + A+ Sbjct: 430 --IRVSDDSIEKAV 441 >ref|NP_813702.1| gp43 [Bacteriophage phi-BT1] emb|CAD80110.1| gp43 [Bacteriophage phi-BT1] Length = 729 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 80/365 (21%) Query: 117 LQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQVLQQ-------TGDELE 169 L A+ G S E K++ E + +YS YG E + +A A+K + QQ T DE+ Sbjct: 66 LAAQLGASPAEAKKLGEAAGAVYSDGYG---ESVADANEALKGLWQQGLVPAGATADEMA 122 Query: 170 KTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGIS--SEQAYNLMAQGAQKGLNTSGGLLN 227 ++ AM V +++ + AV M+ K G++ +++A++++ +GAQ+G N S LL+ Sbjct: 123 NISKKAMDVATVLGDEVGPTSAAVGQML-KTGMAKNADEAFDILVRGAQEGANKSEDLLD 181 Query: 228 AIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKNGSDSTKAAIY 287 +Y V FK +G LLS G++ GA D VAD++K FG ++ G D AA Sbjct: 182 TFNEYGVQFKSVGLDGKTAMGLLSQGLQGGARDADLVADSLKEFGLIVRAGGDEVNAA-- 239 Query: 288 ELFAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGDSANKAMLQLQK 347 + + ++G +K AQ GG +A Sbjct: 240 ----------YKSMGLNGAEMTKAIAQ-------------------GGPAA--------- 261 Query: 348 TLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGSQFEDM------ 401 K+A+++ + L+ IK+P ++ LA +LFG+Q EDM Sbjct: 262 -------------------KDALDKTLDGLRSIKDPAERSALAVTLFGTQAEDMQDALLK 302 Query: 402 --GNKAVLALGQTRNEFDMTRQTLEEAAEIKDSTLSEQFAAMGRELQANLVIPLTESLMP 459 + AV ALG+ T+ + A K + + VIP+ E +P Sbjct: 303 LDPSTAVDALGKVDGAAKSAGDTMHDNAATKVKQFTRGLQTGIVDFIGGTVIPIIERFVP 362 Query: 460 ALQGL 464 L+G+ Sbjct: 363 VLEGI 367 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.127 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,346,087,542 Number of extensions: 55138657 Number of successful extensions: 185301 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 185321 Number of HSP's successfully gapped: 24 Length of query: 999 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 863 Effective length of database: 387,984,114 Effective search space: 334830290382 Effective search space used: 334830290382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)