BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0020.p
         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00143166.1| hypothetical protein [Fusobacterium nucleatum...    65   4e-10
gb|EAG15577.1| unknown [environmental sequence]                        57   2e-07
dbj|BAA96859.1| orf6 [Pectobacterium carotovorum subsp. carotovo...    56   3e-07

>ref|ZP_00143166.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gb|EAA25179.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 204

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 25  IDYRMNKIGSLGPVIFVVAEGAIRTIDEFKRSSSSRWAQHDIIGKKPKKEFIGPGSDSVS 84
            D+  N +GS G + F VA G + T D    S SS+   HD +G+ P  EFI     ++S
Sbjct: 7   FDFSSN-LGSYGDIAFTVARGNVLTPDAIDLSISSKTEDHDNLGEAPYTEFIRRNLRTIS 65

Query: 85  FSVRFSAALGLNPRKELDKLTELDRAGKALPLIIGRKYVGVGLWVITGLSQDWNTLDSIG 144
            +++    L  N  + L KL ++   G+  PLI+G K +    +++TG  Q   + +S G
Sbjct: 66  LNIKLVYTLT-NINEALLKLEKICENGEYYPLILGNKPLSKYGFMLTGFKQGIKSTNSNG 124

Query: 145 NVLDAQVTISLEEYV 159
            +     +++L+EY+
Sbjct: 125 ELEVVNCSLTLKEYI 139


>gb|EAG15577.1| unknown [environmental sequence]
          Length = 288

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 35  LGPVIFVVAEGAIRTIDEFKRSSSSRWAQHDIIGKKPKKEFIGPGSDSVSFSVRFSAALG 94
           LG + F VA G    I   ++S ++ WA+H  I  KP  E+IG G D+ + ++     LG
Sbjct: 5   LGDIEFTVAGG----ISGLEQSGTADWAEHARIQGKPLLEWIGEGLDTCNLTMLLHPMLG 60

Query: 95  LNPRKELDKLTELDRAGKALPLIIGR-KYVGVGLWVITGLSQDWNTLDSIGNVLDAQVTI 153
            +P + L  L +     + L  ++G  +Y+G   +VIT +S       ++G +  A V +
Sbjct: 61  -DPEERLRALRQAKSKHEPLAFVMGSGEYLGA--YVITDISNTLRRATAVGQIAAATVQV 117

Query: 154 SLEEYV 159
           +L+EY 
Sbjct: 118 TLKEYT 123


>dbj|BAA96859.1| orf6 [Pectobacterium carotovorum subsp. carotovorum]
          Length = 309

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 51  DEFKRSSSSRWAQHDIIGKKPKKEFIGPGSDSVSFSVRFSAALGLNPRKELDKLTELDRA 110
           D F  S  + +A+H  I  KP  +FIG   D ++ S+ F       P  EL +L E  RA
Sbjct: 17  DGFNTSFGADYAEHGRIEGKPGLQFIGAKLDEINISLVFHKQY-CTPDTELKRLAEAMRA 75

Query: 111 GKALPLIIGR-KYVGVGLWVITGLSQDWNTLDSIGNVLDAQVTISLEEYV 159
            +A+ L+ G   Y   G +VIT L+      D+ GNVL     ++L EY+
Sbjct: 76  HQAMALVFGNGDY--RGWFVITALTSTSQHTDAKGNVLAMNAELTLREYI 123


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 238,267,324
Number of extensions: 9251146
Number of successful extensions: 19942
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 19949
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 757,237,578
Length adjustment: 115
Effective length of query: 45
Effective length of database: 445,001,193
Effective search space: 20025053685
Effective search space used: 20025053685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)