BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0016.p
         (1172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_938261.1| hypothetical protein D3112p54 [Bacteriophage D3...   112   6e-23

>ref|NP_938261.1| hypothetical protein D3112p54 [Bacteriophage D3112]
 gb|AAQ94492.1| hypothetical protein [Bacteriophage D3112]
          Length = 383

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 110/223 (49%), Gaps = 17/223 (7%)

Query: 648 INMLGDSGRFVGPENDPKDYKCSDAFANSTFFSSWNGTSVADGGKFIYDNSTYGGAAGSL 707
           +N++ DSGRF G  N P   + + +F+ STF S WNG ++ DGGK+IYDN+T GG AG++
Sbjct: 157 LNLMPDSGRFAGIIN-PLILRFTGSFS-STFLSPWNGATITDGGKYIYDNTTNGGTAGNI 214

Query: 708 NSDVASLVTAIGGST----RYGPEYHIASYTMGP----GTYGPNATVPTAYLMTACSSMP 759
           N  V  L+ A+G  +    RYG E++ A  T GP    G+ G + T  T YL     S  
Sbjct: 215 NQRVQDLLVAMGRPSGSLARYGVEFYTALVTAGPNATTGSSGLDGT--TRYLQMTNVSRA 272

Query: 760 AGGVASRFTVSFWIRLKTGTRV-----VIDKDFRLRKNGVIQSAPVQLTSADGWMHIENV 814
                   T   W+R +TG+       V   D+R+  NG        LT ADGW H+   
Sbjct: 273 LFIADGWSTAVLWVRAETGSLHFMPAGVPTTDYRIWLNGEPVLPGQVLTPADGWKHVRLS 332

Query: 815 IGAGSGYSNGAPYIHATAGDVVQIALPXXXXXXXXXXXHKNPV 857
             +  GY NG PY + T G V  +A P           H  P+
Sbjct: 333 KRSAQGYDNGFPYFYMTLGGVAAMACPAFFGGLVDPGIHFAPI 375


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 1,718,359,029
Number of extensions: 73479131
Number of successful extensions: 166243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166247
Number of HSP's successfully gapped: 1
Length of query: 1172
Length of database: 757,237,578
Length adjustment: 137
Effective length of query: 1035
Effective length of database: 385,269,015
Effective search space: 398753430525
Effective search space used: 398753430525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 132 (55.5 bits)