BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0006.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_842716.1| kinb signaling pathway activation protein [Baci... 78 1e-13 ref|NP_976477.1| kinb signaling pathway activation protein [Baci... 78 1e-13 ref|NP_830049.1| KINB signaling pathway activation protein [Baci... 77 2e-13 ref|NP_241108.1| activation of the KinB signalling pathway of sp... 63 3e-09 dbj|BAA90850.1| KbaA [Bacillus halodurans] 63 3e-09 >ref|NP_842716.1| kinb signaling pathway activation protein [Bacillus anthracis str. Ames] gb|AAP24202.1| kinb signaling pathway activation protein [Bacillus anthracis str. Ames] Length = 203 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 5/200 (2%) Query: 7 LNIKKWFFLFWTTXXXXXXXXXXXXXXXQTVNGTIHFKS--TADTLIYPLILLGYGMLVS 64 +N +KW LF+TT + F++ + L L+G G + S Sbjct: 1 MNSRKWVRLFFTTLFLGGISTVIIGFVLEWDKYAKFFQNFDGKEILAVSFWLMGVGFIFS 60 Query: 65 VYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXIFLRTFVGSGRDVS--SD 121 V +Q+GFFAYL ++ G+G+F ++LR+ + + +VS ++ Sbjct: 61 VISQMGFFAYLTIHRFGLGMFRSSSLWNIVQLFFIAFVLFDFVYLRSVLIANGEVSLGNN 120 Query: 122 WXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEIIGVLQIGVDSATVFIVIP 181 VAY K + TN A++P FFM +TI+E + L+I +VIP Sbjct: 121 ILVAGVLFMFGAIVAYIKSKETNKKAFVPALFFMVVVTILEWVPALRINDTDWLYLMVIP 180 Query: 182 LVACNAFQILMLHRILKPIS 201 L+ CNA+Q+L+LHR++ S Sbjct: 181 LLLCNAYQLLILHRLIGKTS 200 >ref|NP_976477.1| kinb signaling pathway activation protein [Bacillus cereus ATCC 10987] gb|AAS39085.1| kinb signaling pathway activation protein [Bacillus cereus ATCC 10987] Length = 203 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 5/200 (2%) Query: 7 LNIKKWFFLFWTTXXXXXXXXXXXXXXXQTVNGTIHFKS--TADTLIYPLILLGYGMLVS 64 +N +KW LF+TT + F++ + L L+G G + S Sbjct: 1 MNSRKWVRLFFTTLFLGGVSTVIIGFVLEWDKYAEFFQNFDGKEILAVSFWLMGVGFIFS 60 Query: 65 VYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXIFLRTFVGSGRDVS--SD 121 V +Q+GFFAYL ++ G+G+F ++LR+ + + +VS ++ Sbjct: 61 VISQMGFFAYLTIHRFGLGMFRSSSLWNIVQLFFIAFVLFDFVYLRSVLIANGEVSLGNN 120 Query: 122 WXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEIIGVLQIGVDSATVFIVIP 181 VAY K + TN A++P FFM +TI+E + L+I +VIP Sbjct: 121 ILVAGVLFMFGAIVAYIKSKETNKKAFVPALFFMVVVTILEWVPALRINDTDWLYLMVIP 180 Query: 182 LVACNAFQILMLHRILKPIS 201 L+ CNA+Q+L+LHR++ S Sbjct: 181 LLLCNAYQLLILHRLIGKAS 200 >ref|NP_830049.1| KINB signaling pathway activation protein [Bacillus cereus ATCC 14579] gb|AAP07250.1| KINB signaling pathway activation protein [Bacillus cereus ATCC 14579] Length = 203 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 56 LLGYGMLVSVYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXIFLRTFVGS 114 L+G G + SV +Q+GFFAYL ++ G+G+F ++LR+ + + Sbjct: 52 LMGVGFIFSVISQMGFFAYLTIHRFGLGMFRSSSLWNAVQLFFIAFVLFDFVYLRSVLIA 111 Query: 115 GRDVS--SDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEIIGVLQIGVD 172 +VS ++ VAY K + TN A++P FFM +TI+E + L+I Sbjct: 112 NGEVSLGNNILVAGMLFVFGAIVAYVKSKETNKKAFVPALFFMVVVTILEWVPALRINDT 171 Query: 173 SATVFIVIPLVACNAFQILMLHRILKPIS 201 +VIPL+ CNA+Q+L+LHR++ S Sbjct: 172 DWLYLMVIPLLLCNAYQLLVLHRLIGKTS 200 >ref|NP_241108.1| activation of the KinB signalling pathway of sporulation [Bacillus halodurans] pir||B83680 kinB sporulation signaling pathway activator kbaA [similarity] - Bacillus halodurans (strain C-125) dbj|BAB03961.1| activation of the KinB signalling pathway of sporulation [Bacillus halodurans] Length = 194 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 3/155 (1%) Query: 45 STADTLIYPLILLGYGMLVSVYAQLGFFAYLILNYMGIGVFPR-RXXXXXXXXXXXXXXX 103 S A+ ++ + + G S+ AQ+GFFAYL L+ G+G+F + Sbjct: 37 SVANLIVGIIWIAGISAAFSLIAQMGFFAYLTLHRFGLGIFKSVKLWNWVQVILIAFVVF 96 Query: 104 XXIFLR--TFVGSGRDVSSDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIV 161 I+LR F G + +AY K + TN A+IP FFM IT + Sbjct: 97 DLIYLRYIAFAQEGETIFHYMVMPLALLVYGAIIAYLKAKDTNKGAFIPALFFMVVITSI 156 Query: 162 EIIGVLQIGVDSATVFIVIPLVACNAFQILMLHRI 196 E + L + PL+A N +QIL+LHR+ Sbjct: 157 EWVPALTVNDPKWLWVYFAPLIAANTWQILILHRL 191 >dbj|BAA90850.1| KbaA [Bacillus halodurans] Length = 194 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 3/155 (1%) Query: 45 STADTLIYPLILLGYGMLVSVYAQLGFFAYLILNYMGIGVFPR-RXXXXXXXXXXXXXXX 103 S A+ ++ + + G S+ AQ+GFFAYL L+ G+G+F + Sbjct: 37 SVANLIVGIIWIAGISAAFSLIAQMGFFAYLTLHRFGLGIFKSVKLWNWVQVILIAFVVF 96 Query: 104 XXIFLR--TFVGSGRDVSSDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIV 161 I+LR F G + +AY K + TN A+IP FFM IT + Sbjct: 97 DLIYLRYIAFAQEGETIFHYMVMPLALLVYGAIIAYLKAKDTNKGAFIPALFFMVVITSI 156 Query: 162 EIIGVLQIGVDSATVFIVIPLVACNAFQILMLHRI 196 E + L + PL+A N +QIL+LHR+ Sbjct: 157 EWVPALTVNDPKWLWVYFAPLIAANTWQILILHRL 191 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.333 0.145 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 215,861,691 Number of extensions: 6469018 Number of successful extensions: 27379 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 27372 Number of HSP's successfully gapped: 5 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 123 (52.0 bits)