BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0002.p
         (203 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_618563.1| integral membrane protein [Methanosarcina aceti...    54   3e-06

>ref|NP_618563.1| integral membrane protein [Methanosarcina acetivorans str. C2A]
 gb|AAM07043.1| integral membrane protein [Methanosarcina acetivorans str. C2A]
          Length = 263

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 71  IFLNNSIKGVXXXXXXXXXXXXPALFLLINGGVIGYLIHISAMQGMDLFDLIVKGLLPHG 130
           IFLNN+   +            P LF+  NG ++G + H+ A +   LF  IV  LLPHG
Sbjct: 137 IFLNNAFVSLLFLILGLAFGVLPVLFVAFNGYIVGVISHLVAQERGLLF--IVLALLPHG 194

Query: 131 XXXXXXXXXXXXFGLQFGWNVISDLF--SSAAAREKRSGAWPAFMRQTLRASIWIVILLF 188
                        GL+ G  V + L    +   +E + G     MR   R   WIV LLF
Sbjct: 195 ILELPMVFLAAGIGLRLGHQVFAALIGRHTEIKKEFKGG-----MRFYFR---WIVPLLF 246

Query: 189 VAAIIESTIT 198
           VAA++E+ IT
Sbjct: 247 VAAVVETFIT 256


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.327    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 217,739,831
Number of extensions: 6517621
Number of successful extensions: 14756
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 14751
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 757,237,578
Length adjustment: 120
Effective length of query: 83
Effective length of database: 431,425,698
Effective search space: 35808332934
Effective search space used: 35808332934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)