BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0001.p
         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241110.1| BH0244~unknown [Bacillus halodurans] >gi|254891...    73   2e-12
ref|NP_691121.1| hypothetical protein OB0200 [Oceanobacillus ihe...    65   6e-10
ref|NP_830051.1| hypothetical protein [Bacillus cereus ATCC 1457...    58   6e-08
ref|NP_976479.1| conserved hypothetical protein [Bacillus cereus...    57   2e-07
ref|NP_842718.1| conserved hypothetical protein [Bacillus anthra...    55   4e-07

>ref|NP_241110.1| BH0244~unknown [Bacillus halodurans]
 pir||D83680 hypothetical protein BH0244 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB03963.1| BH0244 [Bacillus halodurans]
          Length = 77

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 49/65 (75%)

Query: 7  MLGMLFNEKECKELDYVLRKELDEMLLDLSDQRLDHNIRHAIANRYKTVFRMYARFAPQK 66
          MLG LFNEKE +E++Y+L++E++E+LLDLSD R+D  ++ A+  +Y+ V+ +Y RF P  
Sbjct: 1  MLGCLFNEKEAQEIEYLLKREMEELLLDLSDPRIDEVVKRAMEEKYQIVYGIYKRFVPPN 60

Query: 67 ELSKY 71
          E  +Y
Sbjct: 61 ERMRY 65


>ref|NP_691121.1| hypothetical protein OB0200 [Oceanobacillus iheyensis HTE831]
 dbj|BAC12156.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 73

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 48/65 (73%)

Query: 7  MLGMLFNEKECKELDYVLRKELDEMLLDLSDQRLDHNIRHAIANRYKTVFRMYARFAPQK 66
          M+G+L NE E KE++Y++++EL+E+LLDL D R+D  ++ A+  RY+ +F++  R A ++
Sbjct: 1  MIGLLVNEMEQKEMEYLIKRELEEILLDLDDNRIDQMVKSAMRERYRLLFQLLRRVASEQ 60

Query: 67 ELSKY 71
          E  KY
Sbjct: 61 ECMKY 65


>ref|NP_830051.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP07252.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 72

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 45/66 (68%)

Query: 7  MLGMLFNEKECKELDYVLRKELDEMLLDLSDQRLDHNIRHAIANRYKTVFRMYARFAPQK 66
          MLG++  ++E KE++Y+L++EL+E+L D  D+R+   ++ A+  RYK +F ++ R A  +
Sbjct: 1  MLGLMLTKEERKEMEYILKRELEELLFDFEDERIHEVVKKAMEERYKIIFCLFRRVANTE 60

Query: 67 ELSKYA 72
          E  +Y 
Sbjct: 61 ECIRYV 66


>ref|NP_976479.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS39087.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 72

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query: 7  MLGMLFNEKECKELDYVLRKELDEMLLDLSDQRLDHNIRHAIANRYKTVFRMYARFAPQK 66
          MLG +  ++E KE++Y+L++EL+E+L D  D+R+   ++ A+  RYK +F ++ R A  +
Sbjct: 1  MLGFMLTKEEKKEMEYILKRELEELLFDFEDERIHDVVKKAMEERYKIIFCLFRRVANAE 60

Query: 67 ELSKYA 72
          E  +Y 
Sbjct: 61 ECIRYV 66


>ref|NP_842718.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP24204.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 72

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 44/66 (66%)

Query: 7  MLGMLFNEKECKELDYVLRKELDEMLLDLSDQRLDHNIRHAIANRYKTVFRMYARFAPQK 66
          MLG +  ++E KE++Y+L++EL+E+L D  D+R+   ++ A+  RYK +F ++ R A  +
Sbjct: 1  MLGFMLTKEEKKEMEYILKRELEELLFDFEDERIHDVVKKAMEERYKIIFCLFRRVANAE 60

Query: 67 ELSKYA 72
          +  +Y 
Sbjct: 61 DCIRYV 66


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 115,357,448
Number of extensions: 3822505
Number of successful extensions: 10471
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10471
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 30
Effective length of database: 616,052,430
Effective search space: 18481572900
Effective search space used: 18481572900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)