BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0024.p
         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD40107.1| putative acyl carrier protein [Bacillus cereus]         82   4e-15
ref|ZP_00110258.1| COG0236: Acyl carrier protein [Nostoc punctif...    57   1e-07
gb|AAR87757.1| acyl carrier protein [Bacillus cereus]                  57   2e-07
gb|AAL32271.1| putative D-alanyl carrier protein [Bacillus thuri...    56   2e-07

>gb|AAD40107.1| putative acyl carrier protein [Bacillus cereus]
          Length = 87

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 1  MSMHEQIRNFIQDNLVVFD-DEVEFSNEDNIFELGFVNSLFAMKLVTYIESEFNTTIESD 59
          M  HE+IR +I+ NL++F+ +E   +N++NIFE G+VNSLFAM+++ +IE+EF+  +++D
Sbjct: 1  MDNHEKIRQYIKKNLIIFNAEETIVANDENIFEKGYVNSLFAMQMLNFIETEFDIVVDND 60

Query: 60 EMDINNFNTIDNIVSFINSK 79
          E+DI NF+TI+N+V  IN K
Sbjct: 61 ELDIINFSTINNMVDLINKK 80


>ref|ZP_00110258.1| COG0236: Acyl carrier protein [Nostoc punctiforme]
          Length = 83

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 43/59 (72%)

Query: 23 EFSNEDNIFELGFVNSLFAMKLVTYIESEFNTTIESDEMDINNFNTIDNIVSFINSKTV 81
          +   +++IF LGFVNS+FAM+LV ++E EF  TIE+++++ +NF TI+ + + +  KT 
Sbjct: 20 DLKPDEDIFTLGFVNSMFAMQLVLFLEQEFQITIENEDLEFDNFKTINAMTNLVQRKTA 78


>gb|AAR87757.1| acyl carrier protein [Bacillus cereus]
          Length = 81

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 54/77 (70%), Gaps = 5/77 (6%)

Query: 7  IRNFIQDNLVVFDDEVEFSNEDNIFELGFVNSLFAMKLVTYIESEFNTTIESDEMDINNF 66
          I  +IQD++      +EF+++  IFE G VNSLFA++L+T++E EF   +  D++D++N+
Sbjct: 10 IHMYIQDHV-----GIEFNDDTEIFEEGLVNSLFAIQLMTFLEKEFAIKVTMDDLDMDNY 64

Query: 67 NTIDNIVSFINSKTVYQ 83
           ++++I +FI +K + +
Sbjct: 65 KSVNSIGNFIRNKQMVR 81


>gb|AAL32271.1| putative D-alanyl carrier protein [Bacillus thuringiensis serovar
          kurstaki]
          Length = 81

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 54/77 (70%), Gaps = 5/77 (6%)

Query: 7  IRNFIQDNLVVFDDEVEFSNEDNIFELGFVNSLFAMKLVTYIESEFNTTIESDEMDINNF 66
          I  +IQD++      +EF+++  IFE G VNSLFA++L+T++E EF   +  D++D++N+
Sbjct: 10 IHMYIQDHV-----GIEFNDDTEIFEEGLVNSLFAIQLMTFLEKEFAIKVTMDDLDMDNY 64

Query: 67 NTIDNIVSFINSKTVYQ 83
           ++++I +FI +K + +
Sbjct: 65 KSVNSIGNFIRNKQMVR 81


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 112,187,847
Number of extensions: 3915822
Number of successful extensions: 16382
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 16384
Number of HSP's successfully gapped: 4
Length of query: 83
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 31
Effective length of database: 616,052,430
Effective search space: 19097625330
Effective search space used: 19097625330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)