BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0021.p (1036 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00030702.1| COG4615: ABC-type siderophore export system, ... 300 1e-79 gb|EAJ34375.1| unknown [environmental sequence] 299 2e-79 ref|ZP_00109655.1| COG4615: ABC-type siderophore export system, ... 294 9e-78 ref|NP_791975.1| pyoverdine ABC transporter, ATP-binding/permeas... 288 6e-76 ref|NP_682439.1| ABC transporter ATP-binding protein [Thermosyne... 287 1e-75 >ref|ZP_00030702.1| COG4615: ABC-type siderophore export system, fused ATPase and permease components [Burkholderia fungorum] Length = 607 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 172/479 (35%), Positives = 270/479 (56%), Gaps = 28/479 (5%) Query: 565 TKLIT------LTNEMVFQKRTDLIDKILRSSYQNIETIENERIYSVLNNDTETISGVTN 618 T++IT L+ + + Q R + ++ + +++E I + SVL +D +S Sbjct: 109 TRVITGVLFARLSQDTMAQLREHVARRVAEAELRDVERIGAAPVQSVLTDDATNVS---- 164 Query: 619 ILIFGVTSLVT----LLCCFVYLGTINLLGLLISIAVILFAAGLYFLAGRHANQVWGETR 674 +L F + +LV + C YL ++ L+++A IL + Y + A Sbjct: 165 MLFFALPNLVMHGSIVFGCLGYLAWLSWPVCLLAVAAILVGSLGYHAGDKRAIASLEAAG 224 Query: 675 DIQNTFFKFINHMVSGFKELSLHKGKKEEF-QQELKQSCDTYRIKRIQGDLSFANVFVMG 733 Q+ F ++ + +G KEL LH+ + +F +L + D R R + ++A Sbjct: 225 RSQDKLFGYLGALFTGAKELKLHQARSRQFVDGQLGSAIDEVRDHRRRAFSAYAVGVGWI 284 Query: 734 ELLFTLVIGVVAFIFPLLFKDISNSSLRAYIFVFLYMTGPVHGVLDAIPNFIRVRISWNR 793 LF + +GV AF +P L S Y+ VFL+M P+ G+L+ +P R+S +R Sbjct: 285 VFLFYVFLGVAAF-WPALGVHADAPSASGYVVVFLFMLLPLDGLLNNVPTLNAARVSLDR 343 Query: 794 LNELSRQLDIAEERQEGPPDNEWSEAAPVHLVAKDITYHYQSQEGEQ-FAVGPLNLSVRS 852 + ++ + R PPD S A L ++T+ Y + E+ F VGP+NL+ R Sbjct: 344 IEKVMGEF--GALRTSPPPDENASHAPYRTLTLSNVTHSYFHERDERMFRVGPVNLTFRP 401 Query: 853 GQVTFVTGGNGSGKSTLGKLITGLYKPDQGEILLNGRQAAPEELS---QSFSAIFSDFHL 909 G++ F+ GGNGSGK+TL K++TGLY+P+ G I L+G+ E + Q F+A+F+DFHL Sbjct: 402 GELVFIVGGNGSGKTTLAKVLTGLYEPEDGTIELDGKPVGLAERAAYRQRFTAVFNDFHL 461 Query: 910 FERLYGMETGDKSQEIQE------YLQKLDIEHKVQIQQGAFSTVNLSTGQRKRLALLIS 963 F+ L G+ + + Q + KL ++HKVQ+ GAFST LSTGQRKRLAL+++ Sbjct: 462 FDALLGIVDPNDASRAQADARANALVAKLALDHKVQVVNGAFSTRALSTGQRKRLALVVA 521 Query: 964 CLEDRPIYLFDEWAADQDPEFRDYFYHVLIPELKQKGKCIIAITHDDRYFHMADQLLKM 1022 LEDRP YLFDEWAADQDP+F+ FY L+PEL+ +GK ++ I+HDDRYFH+AD++LK+ Sbjct: 522 YLEDRPFYLFDEWAADQDPQFKAVFYEQLLPELRSRGKTVLVISHDDRYFHLADRVLKL 580 >gb|EAJ34375.1| unknown [environmental sequence] Length = 515 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/479 (36%), Positives = 269/479 (56%), Gaps = 28/479 (5%) Query: 565 TKLIT------LTNEMVFQKRTDLIDKILRSSYQNIETIENERIYSVLNNDTETISGVTN 618 T++IT L+ + + Q R + + + +++E I + SVL +D +S Sbjct: 17 TRVITGVLFARLSQDTMAQLREHVARRFAEAELRDVERIGAAPVQSVLTDDATNVS---- 72 Query: 619 ILIFGVTSLVT----LLCCFVYLGTINLLGLLISIAVILFAAGLYFLAGRHANQVWGETR 674 +L F + +LV + C YL ++ L+++A IL + Y + A Sbjct: 73 MLFFALPNLVMHGSIVFGCLGYLAWLSWPVCLLALAAILVGSLGYHAGDKRAIASLEAAG 132 Query: 675 DIQNTFFKFINHMVSGFKELSLHKGKKEEF-QQELKQSCDTYRIKRIQGDLSFANVFVMG 733 Q+ F ++ + +G KEL LH+ + +F +L + D R R ++A Sbjct: 133 RSQDKLFGYLGALFTGAKELKLHQARSRQFVDGQLGSAIDEVRDHRRHAFSAYAVGVGWI 192 Query: 734 ELLFTLVIGVVAFIFPLLFKDISNSSLRAYIFVFLYMTGPVHGVLDAIPNFIRVRISWNR 793 LF + +GV AF +P L S Y+ VFL+M P+ G+L+ +P R+S +R Sbjct: 193 VFLFYVFLGVAAF-WPALGVHADAPSASGYVVVFLFMLLPLDGLLNNVPTLNAARVSLDR 251 Query: 794 LNELSRQLDIAEERQEGPPDNEWSEAAPVHLVAKDITYHYQSQEGEQ-FAVGPLNLSVRS 852 + ++ + R PPD S A L +D+T+ Y + E+ F VGP+NL+ R Sbjct: 252 IEKVMSEF--GALRTAPPPDENASHAPYRTLTLRDVTHAYFHERDERMFRVGPVNLTFRP 309 Query: 853 GQVTFVTGGNGSGKSTLGKLITGLYKPDQGEILLNGRQAAPEELS---QSFSAIFSDFHL 909 G++ F+ GGNGSGK+TL K++TGLY+P+ G I L+G+ E + Q F+A+F+DFHL Sbjct: 310 GELVFIVGGNGSGKTTLAKVLTGLYEPEGGTIELDGKPIGLAERAAYRQRFTAVFNDFHL 369 Query: 910 FERLYGM---ETGDKSQ---EIQEYLQKLDIEHKVQIQQGAFSTVNLSTGQRKRLALLIS 963 F+ L G+ +SQ + KL ++HKVQ+ GAFST LSTGQRKRLAL+I+ Sbjct: 370 FDALLGIVDPNAASRSQADARANALVAKLALDHKVQVVNGAFSTRELSTGQRKRLALVIA 429 Query: 964 CLEDRPIYLFDEWAADQDPEFRDYFYHVLIPELKQKGKCIIAITHDDRYFHMADQLLKM 1022 LEDRP YLFDEWAADQDP+F+ FY L+PEL+ +GK ++ I+HDDRYFH+AD++LK+ Sbjct: 430 YLEDRPFYLFDEWAADQDPQFKAVFYEQLLPELRSRGKTVLVISHDDRYFHLADRVLKL 488 >ref|ZP_00109655.1| COG4615: ABC-type siderophore export system, fused ATPase and permease components [Nostoc punctiforme] Length = 551 Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 161/466 (34%), Positives = 263/466 (56%), Gaps = 17/466 (3%) Query: 567 LITLTNEMVFQKRTDLIDKILRSSYQNIETIENERIYSVLNNDTETISGVTNILIFGVTS 626 LI L+ + + R L IL S +++E I + +VL D +TIS + F + Sbjct: 72 LIQLSQKAILNLRVLLTRSILASPLRHLEQIGAHGLLAVLTEDIQTISNTVITVPFVCIN 131 Query: 627 LVTLLCCFVYLGTINLLGLLISIAVILFAAGLYFLAGRHANQVWGETRDIQNTFFKFINH 686 + ++ C +YL ++ + LI I+ + Y L A R+ ++ FK Sbjct: 132 IAIVIACLIYLSWLSKIVFLIGISFMFLGIFSYSLPMMKAMSFLKLAREQEDRLFKHFRS 191 Query: 687 MVSGFKELSLHKGKKEEF-QQELKQSCDTYRIKRIQGDLSFANVFVMGELLFTLVIGVVA 745 ++ G KEL LH+ +++ F +EL + ++R + G FA G++LF + IG++ Sbjct: 192 VIQGTKELKLHRRRRQAFLSEELHTTASSFRRHNVVGMSIFAAAASWGQVLFFVAIGLLL 251 Query: 746 FIFPLLFKDISNSSLRAYIFVFLYMTGPVHGVLDAIPNFIRVRISWNRLNELSRQLDIAE 805 FI P + K I + L AY +Y+ P+ ++ +P+ + ++ ++ L L +A Sbjct: 252 FIIPTINK-IPPAILSAYALTIIYLISPLEYIMSMMPSITKALVALKKVESLG--LSLAS 308 Query: 806 ERQE------GPPDNEWSEAAPVHLVAKDITYHYQSQEGEQFAVGPLNLSVRSGQVTFVT 859 E D W+ V++ +YQ +E F +GP+ L G++ F+ Sbjct: 309 YSNEICDNVSLASDQYWNCLELVNITHA----YYQEREESNFILGPIKLKFHPGELVFIV 364 Query: 860 GGNGSGKSTLGKLITGLYKPDQGEILLNGRQAAPEELS---QSFSAIFSDFHLFERLYGM 916 GGNGSGKSTL KLI+GLY P+ G I L+ + L Q FS +FSDF+LF+R G+ Sbjct: 365 GGNGSGKSTLAKLISGLYIPETGNIYLDDQLIDNHNLEWYRQQFSVVFSDFYLFDRFLGL 424 Query: 917 ETGDKSQEIQEYLQKLDIEHKVQIQQGAFSTVNLSTGQRKRLALLISCLEDRPIYLFDEW 976 ++GD + ++YL +L ++HKV++ G ST +LS GQRKRLAL+ + LEDRPIY+FDEW Sbjct: 425 DSGDLDIQTRKYLIELQLDHKVKVNNGVLSTTDLSQGQRKRLALVTAYLEDRPIYMFDEW 484 Query: 977 AADQDPEFRDYFYHVLIPELKQKGKCIIAITHDDRYFHMADQLLKM 1022 A+DQDP F++ FY L+ ELK++GK ++ I+HDD+YF++AD+++K+ Sbjct: 485 ASDQDPVFKEIFYTQLLVELKKRGKTVLVISHDDQYFYLADRIVKL 530 >ref|NP_791975.1| pyoverdine ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO55670.1| pyoverdine ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 554 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 257/459 (55%), Gaps = 14/459 (3%) Query: 572 NEMVFQKRTDLIDKILRSSYQNIETIENERIYSVLNNDTETISGVTNILIFGVTSLVTLL 631 +V R +L K+L + + +E + R+ VL ND T+S + V S L Sbjct: 85 QRVVANLRRELAAKVLVAPIEQLERYRSHRLIPVLLNDVNTLSTFALSVAPMVISFTVTL 144 Query: 632 CCFVYLGTINLLGLLISIAVILFAAGLYFLAGRHANQVWGETRDIQNTFFKFINHMVSGF 691 C YL ++ L +++ ++ G +LA + R+ ++ K + +G Sbjct: 145 GCLTYLALLSWQILALTVLTVVLGTGAQYLAHAFGMRSILAARNSEDELQKHYQALSAGA 204 Query: 692 KELSLHKGKKEEFQQELKQSCDTYRIKRIQGDLSFANVFV----MGELLFTLVIGVVAFI 747 KEL + + +++ E K T I R ++ AN+FV G +LF VIG+ A Sbjct: 205 KELRIQRKRRQHMLDE-KIHGATENICR--SNIRAANIFVSAETFGSMLFFAVIGM-AIA 260 Query: 748 FPLLFKDISNSSLRAYIFVFLYMTGPVHGVLDAIPNFIRVRISWNRLNELSRQLDIAEER 807 F ++ + L ++ V LYM GP+ ++ A+P R +I+ R+ ELS + + E Sbjct: 261 FQAMWPTTEKTVLGGFVLVMLYMKGPLERLITALPGISRAQIAMRRIAELSWKFS-SPEP 319 Query: 808 QEGPPDNEWSEAAPVHLVAKDITYHYQSQEG-EQFAVGPLNLSVRSGQVTFVTGGNGSGK 866 D S A L ++ Y Y EG + F +GP++LS++ G + F+ G NG GK Sbjct: 320 HLLVSDRPNSLANMQTLELHNLRYDYPPVEGSDAFHLGPVDLSIKQGDIVFIVGENGCGK 379 Query: 867 STLGKLITGLYKPDQGEILLNGRQAAPEELS---QSFSAIFSDFHLFERLYGMETGDKSQ 923 +TL KL+ GLY P QGEI LNG+ PE L Q F+ IF+D++LF+ E Q Sbjct: 380 TTLIKLLLGLYTPQQGEIHLNGQAVTPENLDDYRQLFTTIFADYYLFDEPLQGEAA-LPQ 438 Query: 924 EIQEYLQKLDIEHKVQIQQGAFSTVNLSTGQRKRLALLISCLEDRPIYLFDEWAADQDPE 983 + +YL++LDI HKV IQ GAF+T +LSTGQRKRLAL+ + L++R + +FDEWAADQDP Sbjct: 439 DAGKYLERLDIAHKVSIQDGAFTTTDLSTGQRKRLALINAWLDERQVLVFDEWAADQDPA 498 Query: 984 FRDYFYHVLIPELKQKGKCIIAITHDDRYFHMADQLLKM 1022 FR FY L+PELKQ+GK II I+HDDRYF++ADQL++M Sbjct: 499 FRRVFYTELLPELKQQGKTIIVISHDDRYFYIADQLVRM 537 >ref|NP_682439.1| ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1] dbj|BAC09201.1| ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1] Length = 542 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 176/467 (37%), Positives = 271/467 (58%), Gaps = 18/467 (3%) Query: 567 LITLTNEMVFQKRTDLIDKILRSSYQNIETIENERIYSVLNNDTETISGVTNILIFGVTS 626 L+ + V++ R L +IL S + +ETI + ++ + L D + +S ++L + Sbjct: 72 LVRAAQQAVYEMRLLLSRQILASPLRQLETIGHPQLLATLTEDVDAVSRSFSVLPNLFNA 131 Query: 627 LVTLLCCFVYLGTINLLGLLISIAVILFAAGLY-FLAGRHANQVWGETRDIQNTFFKFIN 685 + ++ C +Y+G ++ +A+I+ G Y FLAGR A + + R Q+ F Sbjct: 132 IAIVIGCLIYMGWLSPPLFFALVALIVIGTGSYLFLAGR-AKKFLEQARQQQDHLFHHFR 190 Query: 686 HMVSGFKELSLHKGKKEEF-QQELKQSCDTYRIKRIQGDLSFANVFVMGELLFTLVIGVV 744 + G KEL L++ ++ F EL + R + G + FA G+LL + IG Sbjct: 191 TLTEGNKELKLNRQRRLAFFYGELTPTAQKTRQQNELGYMVFAIAASWGQLLLFVTIGFF 250 Query: 745 AFIFPLLFKDISNSSLRAYIFVFLYMTGPVHGVLDAIPNFIRVRISWNRLNELSRQLDIA 804 F P L + + L Y+ +Y+ P+ V+DAIP F R ++ ++ L QL + Sbjct: 251 LFTLPHLL-GATPTVLSGYVLTIIYLMLPMQQVIDAIPVFSRASVALKKVESL--QLSLG 307 Query: 805 EERQEGPPDNEWSEAAPV---HLVAKDITYHYQ-SQEGE--QFAVGPLNLSVRSGQVTFV 858 + RQ+ N E P+ L + I + Y+ S E E F +GPL+L++ +G++ F+ Sbjct: 308 DPRQD---INNRGELPPLGWKTLSLRQICHQYRGSHEDEPATFTLGPLSLTIEAGELVFI 364 Query: 859 TGGNGSGKSTLGKLITGLYKPDQGEILLNGRQAAPEELS---QSFSAIFSDFHLFERLYG 915 GGNGSGKSTL K+ITGLY PDQGEI ++ ++ Q F A+FSDF+LF+ L G Sbjct: 365 VGGNGSGKSTLAKIITGLYIPDQGEIWVDDHCLQLQDYEWYRQHFVAVFSDFYLFDSLLG 424 Query: 916 METGDKSQEIQEYLQKLDIEHKVQIQQGAFSTVNLSTGQRKRLALLISCLEDRPIYLFDE 975 +E+ ++ I YL+KL + HKV+++ FST +LS G+RKRLALL++ L+DRP YLFDE Sbjct: 425 IESPERLALIPHYLEKLRLSHKVRLEGNRFSTTSLSQGERKRLALLLAYLDDRPAYLFDE 484 Query: 976 WAADQDPEFRDYFYHVLIPELKQKGKCIIAITHDDRYFHMADQLLKM 1022 WAADQDP FRD FY L+PELK +GK + I+HDDRYF +AD+L+K+ Sbjct: 485 WAADQDPMFRDIFYRQLLPELKAQGKTVFVISHDDRYFDVADRLIKL 531 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,466,717,836 Number of extensions: 62224167 Number of successful extensions: 219706 Number of sequences better than 1.0e-05: 6777 Number of HSP's gapped: 218263 Number of HSP's successfully gapped: 6839 Length of query: 1036 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 900 Effective length of database: 387,984,114 Effective search space: 349185702600 Effective search space used: 349185702600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)