BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0010.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242730.1| BH1864~unknown conserved protein in others [Bac... 176 8e-43 ref|NP_561287.1| conserved hypothetical protein [Clostridium per... 158 2e-37 ref|NP_437636.1| putative sugar uptake ABC transporter periplasm... 158 2e-37 ref|NP_978215.1| extracellular solute-binding protein, putative ... 156 9e-37 ref|NP_694346.1| hypothetical protein OB3424 [Oceanobacillus ihe... 154 3e-36 >ref|NP_242730.1| BH1864~unknown conserved protein in others [Bacillus halodurans] pir||H83882 hypothetical protein BH1864 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05583.1| BH1864~unknown conserved protein in others [Bacillus halodurans] Length = 461 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 184/345 (53%), Gaps = 20/345 (5%) Query: 46 KVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDV 105 V ++ S WG + AV +L D F +P+I+V IP D Y K+ T LA GTAPDV Sbjct: 42 NVHISISTWGLPDELAVFNELVDNFENDNPNIKVNVIHIPDD-YSGKMNTMLAGGTAPDV 100 Query: 106 FLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIG-----GKLYYLPKD 160 +GDF +V G+ + D + + ++++ L G G LY LPKD Sbjct: 101 VFTSDGDFGGWVKAGLFLNIQDMVEESSINLEDMWESALSRYRWDGRVLGEGDLYALPKD 160 Query: 161 FNPLALWYNKKIFDDAGVAYPSES--WTWDDMFAAAQKLTKQENG--KYTQFGFNAGTWE 216 P AL+YNK++FD+AGV YP TWD++ A+ LT ENG + QFG WE Sbjct: 161 IGPSALFYNKELFDEAGVPYPDPEVPMTWDELLEKAKALTIDENGNGRPDQFGLGPIWWE 220 Query: 217 YPIYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGG 276 ++W+NG DI +ED T MN + V+AL ++VA T ++V+P + + M Sbjct: 221 ----GFIWSNGGDILSEDRTTF--VMNEPEAVEAL-QFVADLTHVHKVAPDSRSLEAMDA 273 Query: 277 DSSMFMTGKLAMMVTGRWIKSDLDKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKH 336 D MF TG++AMM GRW+ K D ++ A P GA G + + G+A+N T Sbjct: 274 DQ-MFETGRIAMMTAGRWMVPTYRKLDFDWDVAPPPAGATGVSSSWSGSVGYAINKDTNF 332 Query: 337 KAESYELMKWLSGADAQKLRSKNGLVLPA--TVAELDQVKATEEK 379 E+++L+++L+G Q+++++ G +P +V+E D EK Sbjct: 333 PEEAFQLIEYLAGERGQEIQTELGFAIPTYKSVSETDVFLQPGEK 377 >ref|NP_561287.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB80077.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 422 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 184/353 (52%), Gaps = 22/353 (6%) Query: 47 VKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDVF 106 V L+++IW + ++LADEF + +P+ ++ + I + Y T L + G+ PD F Sbjct: 36 VTLSYAIWDSGQEKGL-RKLADEFESKNPNTKINIQVIGWNDYWTMLEAAATGGSLPDTF 94 Query: 107 LVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKDFNPLAL 166 + + Y G++ L+DYI + DL + + L ++ I Y +PKDF+ + L Sbjct: 95 WMHSNEIHRYGSNGMLLSLNDYIKNSEVVDLKNFPEGLNEIYNINDNQYAIPKDFDTIGL 154 Query: 167 WYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYP-IYTYLWA 225 WYNKK+FD+A + YP E+W WD ++ ++KLTK + +QFG A Y +++ Sbjct: 155 WYNKKMFDEAQIPYPDETWNWDKLYEVSKKLTKADG---SQFGVLAPLHNQEGYYNFVYQ 211 Query: 226 NGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDSSMFMTGK 285 NG DI +D K G+ N KT++A+ Y LS + +SP + + + G+ Sbjct: 212 NGGDIITDD--KKSGYDN-PKTIEAMNYYFNLS--KEGLSPKIFNDKER---AEALQNGQ 263 Query: 286 LAMMVTGRWIKSDLDKSDVEYGS-----ALIPKGADGTRAGIIAAAGWAMNSKTKHKAES 340 AM G W +D EY + ++P DG RA I G A+++KT+H E+ Sbjct: 264 AAMGFFGSWNLGSF--ADNEYMAKNFDVTVLPSSNDGKRATIFNGLGNAISAKTEHPEEA 321 Query: 341 YELMKWLSGADAQKLRSKNGLVLPAT--VAELDQVKATEEKDKPVIEMMDFAQ 391 ++ +++LS + Q+ + + G+ +PA A++ T K ++M+D+AQ Sbjct: 322 WKWVEYLSSKEGQEKQGELGIAIPAYNGAADIWAKNNTTFNTKAFVDMLDYAQ 374 >ref|NP_437636.1| putative sugar uptake ABC transporter periplasmic solute-binding protein precursor [Sinorhizobium meliloti 1021] pir||H95978 probable sugar uptake ABC transporter periplasmic solute-binding protein precursor SMb20971 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49496.1| putative sugar uptake ABC transporter periplasmic solute-binding protein precursor [Sinorhizobium meliloti] Length = 410 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/381 (28%), Positives = 191/381 (50%), Gaps = 14/381 (3%) Query: 40 AGGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLAS 99 A ++ + L F+ W + A++Q +A +F HP ++V+ EP +GY KL + + Sbjct: 20 AATARAEEVLRFATWDTGESLAIQQAIAKKFEEKHPGVKVQVEPY-AEGYDQKLVAAFGA 78 Query: 100 GTAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKA-FDLNIYQKNLIDMEQIGGKLYYLP 158 G PDV + +F Y + PLD+ IA+D A + + + L++ +I GK Y +P Sbjct: 79 GNPPDVMYMW--NFPQYYTS--LMPLDELIARDSAEIKPDDFPEGLMNTTRIEGKTYGMP 134 Query: 159 KDFNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYP 218 F ++YNK++F AGV P E WTWDD+ A A K + E GK F +A Y Sbjct: 135 SGFTTQVVFYNKEMFAKAGVEEPKEGWTWDDLRAKAAKF-RDEAGKVYGFAVDAKPDPYD 193 Query: 219 IYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDS 278 +LW+NGT ++DG + +G+MN + L + ++ E V+ D GGD Sbjct: 194 FEQFLWSNGTKYISDDGKEIDGYMNSDAAAAVLGMFADMARKEEAVTLHLGDET--GGD- 250 Query: 279 SMFMTGKLAMMVTGRWIKSDLDKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKHKA 338 ++F GK+AM + W K+D+D + YG A +P D + + ++ H Sbjct: 251 TLFQGGKIAMFQSAMWDKADIDAAGFSYGVAPLPTFGDRPAHSALGVSAISIAKDAAHPD 310 Query: 339 ESYELMKWLSGADAQKLRSKNGLVLPATVAELDQVKATEEKDKPVIEMMDFA--QKPVTL 396 ++E +K+ S D+ +R N L + +VAE + + KP +++ + ++ L Sbjct: 311 LAWEFVKFFSSPDSVAMRV-NDLPVRKSVAEAKGM-TKDPVYKPFFDILATSNTERHAYL 368 Query: 397 RSVNGPVFKEAFTQALEKTLL 417 ++ N ++ +A+E T++ Sbjct: 369 KNANWGKIQDNLARAIEATMI 389 >ref|NP_978215.1| extracellular solute-binding protein, putative [Bacillus cereus ATCC 10987] gb|AAS40823.1| extracellular solute-binding protein, putative [Bacillus cereus ATCC 10987] Length = 416 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 180/331 (54%), Gaps = 20/331 (6%) Query: 39 NAGGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLA 98 N EK++L +++W AVE+ + +FN HP+I+VK E Y KL T+ Sbjct: 27 NTSSKDEKIELRYALWDKKQLPAVEK-VVQQFNEKHPNIKVKIELTAYGQYFQKLETAAT 85 Query: 99 SGTAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLP 158 PDVF + + + Y V+ PLDD KDK L Y K+L+D+ + K Y +P Sbjct: 86 GNALPDVFWMNGPNVVKYASGKVLMPLDDKAKKDKY-KLENYPKSLVDLYTVDNKTYGIP 144 Query: 159 KDFNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQEN---GKYTQFGFNAGTW 215 KDF+ ALWYNKK+FD+AGVAYP +SW W+ M AA+KLTK+E G G G Sbjct: 145 KDFDTTALWYNKKLFDEAGVAYPDDSWDWEKMKEAAKKLTKKEKDVWGFAAAMGNQGG-- 202 Query: 216 EYPIYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPT-PQDTQTM 274 Y ++ N + ++D K GF N + ++A +S + +SPT Q T+T Sbjct: 203 ---YYDLIYQNKGYVLSKD-KKTVGF-NKPQAIEAFN--YNISFIKEGLSPTFAQMTETT 255 Query: 275 GGDSSMFMTGKLAMMVTGRWIKSDLDKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKT 334 D +F++GK+AM+ G W+ + K + + A++PKG + RA +I +++KT Sbjct: 256 ASD--LFLSGKVAMIFDGPWMVPEY-KKNPDLNIAVMPKGKE--RAVMIHGLANVISAKT 310 Query: 335 KHKAESYELMKWLSGADAQKLRSKNGLVLPA 365 K+ ++E +K+L +A + ++ G V+PA Sbjct: 311 KYPDAAWEFVKYLGSKEAADVFAETGTVIPA 341 >ref|NP_694346.1| hypothetical protein OB3424 [Oceanobacillus iheyensis HTE831] dbj|BAC15380.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 418 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 16/331 (4%) Query: 39 NAGGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLA 98 N+ K+K L ++W + + AV+ + + F +PDIEVK P Y TKL TSL Sbjct: 22 NSSSGKDKNTLEIALWDENASEAVDASI-EAFKKENPDIEVKVTYTPFAEYWTKLRTSLG 80 Query: 99 SGTAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLP 158 G+ PD+F + +F YVD +IE L+ YI D F Y + ++D+ +LY P Sbjct: 81 GGSGPDIFWMNGPNFYEYVDSNLIENLETYIDDDPQFAKENYYETVLDLYSFEDELYAAP 140 Query: 159 KDFNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYP 218 + + L+YNKK+FD+AGV YP +SWTW+D+ ++LT +E + G+ A E Sbjct: 141 YFVDSIGLFYNKKLFDEAGVPYPDDSWTWEDIEMYGEELTNKEENIH---GYVARITENQ 197 Query: 219 --IYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENR-VSPTPQDTQTMG 275 Y + G I NED T++ G T +A E + L ++ +SPT Q+ Q Sbjct: 198 QGYYNIIPQAGGYIINEDKTQS-----GFNTPEAKEAFTFLQNLIDKGISPTVQN-QIET 251 Query: 276 GDSSMFMTGKLAMMVTGRWIKSDLDKS-DVEYGSALIPKGADGTRAGIIAAAGWAMNSKT 334 + MF++ ++AM+ ++ K + G A +P G + +I GWAMNSK+ Sbjct: 252 KATQMFISERVAMLPEISVHAAEFHKELGDDLGVAPLPAGKE--EGSVIHGIGWAMNSKS 309 Query: 335 KHKAESYELMKWLSGADAQKLRSKNGLVLPA 365 +K S+EL+K LSG + ++ G PA Sbjct: 310 DNKELSWELIKSLSGEEGITTMAETGFSTPA 340 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 641,516,962 Number of extensions: 28598869 Number of successful extensions: 51146 Number of sequences better than 1.0e-05: 381 Number of HSP's gapped: 51003 Number of HSP's successfully gapped: 381 Length of query: 439 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 310 Effective length of database: 406,989,807 Effective search space: 126166840170 Effective search space used: 126166840170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)