BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0015.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978995.1| thiJ/pfpI family protein [Bacillus cereus ATCC ... 260 1e-68 ref|NP_389760.1| similar to hypothetical proteins from B. subtil... 256 2e-67 ref|NP_656534.1| ThiJ, ThiJ/PfpI family [Bacillus anthracis A201... 249 2e-65 ref|NP_832426.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579] >... 242 4e-63 ref|ZP_00078943.1| COG0693: Putative intracellular protease/amid... 204 1e-51 >ref|NP_978995.1| thiJ/pfpI family protein [Bacillus cereus ATCC 10987] gb|AAS41603.1| thiJ/pfpI family protein [Bacillus cereus ATCC 10987] Length = 210 Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 116/200 (58%), Positives = 153/200 (76%) Query: 6 YLYVFDTMADWEIGYLTAELNSGRYYKKGLAPSTIVTVANEKTLVTTMGGLTIMPDITVD 65 +LYVF+TM+DWE GYL AELNSGRY+KK LAP ++TV K ++TTMGGL+I PDI++D Sbjct: 7 FLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLSIKPDISLD 66 Query: 66 ECSMASAAALILPGGNTWTEAIHNPILQLAERYIQKEILVAAICGATMGLAQAGLLNSRP 125 EC+ S LILPGG TW+E IH PIL+ ++ ++ +VAAICGAT LA G L++R Sbjct: 67 ECTFESKDLLILPGGTTWSEEIHQPILERIDQALKLGTIVAAICGATDALANMGYLDTRK 126 Query: 126 HTSNDLEYLRMVCPAYTGGDFYQMQSVVTDGTLITASGIAPLEFAVHVLKALDVMTPEKL 185 HTSN+LEY +MVCP Y G FY+++SVV+D L+TASGIAPLEFA+ VLK +DV TP+ L Sbjct: 127 HTSNNLEYTKMVCPNYKGEKFYELESVVSDANLVTASGIAPLEFAMEVLKKMDVFTPDTL 186 Query: 186 KAWYSLYKTQEAKYFYELMG 205 +WY L KT + +YF++L+ Sbjct: 187 HSWYKLNKTHKPEYFFQLIN 206 >ref|NP_389760.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] pir||A69898 conserved hypothetical protein yoaZ - Bacillus subtilis gb|AAB84456.1| YoaZ [Bacillus subtilis] emb|CAB13771.1| yoaZ [Bacillus subtilis subsp. subtilis str. 168] Length = 210 Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 119/202 (58%), Positives = 148/202 (73%) Query: 3 HTVYLYVFDTMADWEIGYLTAELNSGRYYKKGLAPSTIVTVANEKTLVTTMGGLTIMPDI 62 VYLYVF TM+DWE GYL AELNSGRY+K+ A +VTV K ++TT+GGL+I PDI Sbjct: 4 RKVYLYVFHTMSDWEYGYLIAELNSGRYFKQDAASLKVVTVGVNKEMITTLGGLSIKPDI 63 Query: 63 TVDECSMASAAALILPGGNTWTEAIHNPILQLAERYIQKEILVAAICGATMGLAQAGLLN 122 ++DEC++ S +ILPGGNTW E IH PIL+ ++ +AAICGAT+GLA G LN Sbjct: 64 SLDECTLGSQDLIILPGGNTWGEDIHQPILKKVGDALKLGTTIAAICGATLGLANEGYLN 123 Query: 123 SRPHTSNDLEYLRMVCPAYTGGDFYQMQSVVTDGTLITASGIAPLEFAVHVLKALDVMTP 182 SR HTSNDL+Y+ MVCP Y G FY+ V+D L+TASGIAPLEFAV VLK LDV P Sbjct: 124 SRKHTSNDLDYMNMVCPNYKGETFYEKGPAVSDENLVTASGIAPLEFAVEVLKKLDVFAP 183 Query: 183 EKLKAWYSLYKTQEAKYFYELM 204 + L++WY L KTQ+ +YF+ELM Sbjct: 184 DTLRSWYKLNKTQKPEYFFELM 205 >ref|NP_656534.1| ThiJ, ThiJ/PfpI family [Bacillus anthracis A2012] ref|NP_845018.1| thiJ/pfpI family protein [Bacillus anthracis str. Ames] gb|AAP26504.1| thiJ/pfpI family protein [Bacillus anthracis str. Ames] Length = 210 Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 114/200 (57%), Positives = 149/200 (74%) Query: 6 YLYVFDTMADWEIGYLTAELNSGRYYKKGLAPSTIVTVANEKTLVTTMGGLTIMPDITVD 65 +LYVF+TM+DWE GYL AELNSGRY+KK LAP ++TV K ++TTMGGL I PDI++D Sbjct: 7 FLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLD 66 Query: 66 ECSMASAAALILPGGNTWTEAIHNPILQLAERYIQKEILVAAICGATMGLAQAGLLNSRP 125 EC++ S LILPGG TW+E IH PIL+ + ++ +VAAICGAT LA G L++R Sbjct: 67 ECTLESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRK 126 Query: 126 HTSNDLEYLRMVCPAYTGGDFYQMQSVVTDGTLITASGIAPLEFAVHVLKALDVMTPEKL 185 HTSN+LEY +MVCP Y G FY++ V+D L+TASGIAPLEFA+ VLK +DV T + L Sbjct: 127 HTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIAPLEFAMEVLKKIDVFTLDAL 186 Query: 186 KAWYSLYKTQEAKYFYELMG 205 +WY+L KT + +YF++LM Sbjct: 187 HSWYNLNKTHKPEYFFQLMN 206 >ref|NP_832426.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579] gb|AAP09627.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579] Length = 202 Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 111/194 (57%), Positives = 144/194 (74%) Query: 12 TMADWEIGYLTAELNSGRYYKKGLAPSTIVTVANEKTLVTTMGGLTIMPDITVDECSMAS 71 TM+DWE GYL AELNSGRY+KK LAP ++TV K ++TTMGGL+I PDI++DEC++ S Sbjct: 5 TMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLSIKPDISLDECTLES 64 Query: 72 AAALILPGGNTWTEAIHNPILQLAERYIQKEILVAAICGATMGLAQAGLLNSRPHTSNDL 131 LIL GG TW+E IH PIL+ + ++ +VAAICGAT LA G L++R HTSN+L Sbjct: 65 KDLLILSGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNL 124 Query: 132 EYLRMVCPAYTGGDFYQMQSVVTDGTLITASGIAPLEFAVHVLKALDVMTPEKLKAWYSL 191 EY +MVCP Y G FY++ S V+D L+TASGIAPLEFA VLK +DV TP+ L +WY+L Sbjct: 125 EYTKMVCPNYKGEKFYELGSAVSDANLVTASGIAPLEFAREVLKKIDVFTPDALHSWYNL 184 Query: 192 YKTQEAKYFYELMG 205 KT + +YF++LM Sbjct: 185 NKTHKPEYFFQLMN 198 >ref|ZP_00078943.1| COG0693: Putative intracellular protease/amidase [Methanosarcina barkeri] Length = 156 Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 94/152 (61%), Positives = 120/152 (78%) Query: 53 MGGLTIMPDITVDECSMASAAALILPGGNTWTEAIHNPILQLAERYIQKEILVAAICGAT 112 MGG+ ++PDI +E + AAALILPGGNTWTE IH+PIL+ AE ++K ++V AICGAT Sbjct: 1 MGGVKVLPDIGHEELIIEDAAALILPGGNTWTEPIHDPILKKAEECLKKGVIVGAICGAT 60 Query: 113 MGLAQAGLLNSRPHTSNDLEYLRMVCPAYTGGDFYQMQSVVTDGTLITASGIAPLEFAVH 172 MGLA+ G+LN+R HTSND +L+M+CP YTG +Y+ + VTDG LITASG APLEF VH Sbjct: 61 MGLAEKGMLNNRWHTSNDPGFLKMMCPNYTGEMYYKQEPTVTDGNLITASGTAPLEFTVH 120 Query: 173 VLKALDVMTPEKLKAWYSLYKTQEAKYFYELM 204 VLK LDV + E L +WY+LY+T E+KYFYEL+ Sbjct: 121 VLKKLDVFSLETLDSWYNLYRTHESKYFYELI 152 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 303,715,334 Number of extensions: 11370087 Number of successful extensions: 28329 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 28345 Number of HSP's successfully gapped: 26 Length of query: 205 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 85 Effective length of database: 431,425,698 Effective search space: 36671184330 Effective search space used: 36671184330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)