BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0014.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_813870.1| 5'-nucleotidase family protein [Enterococcus fa... 125 3e-28 ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [H... 124 6e-28 ref|NP_206904.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase (c... 121 6e-27 ref|NP_782560.1| CLV1 receptor kinase [Clostridium tetani E88] >... 120 1e-26 ref|NP_971480.1| phosphatase/nucleotidase [Treponema denticola A... 118 3e-26 >ref|NP_813870.1| 5'-nucleotidase family protein [Enterococcus faecalis V583] gb|AAO79942.1| 5'-nucleotidase family protein [Enterococcus faecalis V583] Length = 1313 Score = 125 bits (314), Expect = 3e-28, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 1 VYRIYPFDNVLYVVTVTGQELRAYMEVSATHFNQWQPGDREITANPEVPSYLYDMFAGID 60 ++ IY + N L V + G+ L Y+E ++NQ QP D I+ NP + Y YDM +G+D Sbjct: 485 IFDIYKYPNTLVSVPINGENLLKYLEKQGAYYNQTQPDDLTISFNPNIRVYNYDMISGVD 544 Query: 61 YQIDLSQPAGHRIINVLYQGQPLADTQQLQLAVNNYRYSSLLKASKLVSRAKHWESSCSV 120 Y+ID+S+P G RI++ GQPL ++ +A+NNYRY L V ++ Sbjct: 545 YKIDISKPVGERIVDAKIDGQPLDPAKEYTIAMNNYRYGGLASQGIQVGEPIKNSDPETL 604 Query: 121 RDMLVSYIKEQGTLSP--EVDNNWSIVG 146 R M+V YIK++GTL P E++ NWSI+G Sbjct: 605 RGMIVDYIKKKGTLDPEQEIERNWSIIG 632 >ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori J99] pir||B71973 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) cpdB [similarity] - Helicobacter pylori (strain J99) gb|AAD05687.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori J99] Length = 581 Score = 124 bits (312), Expect = 6e-28, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 9/154 (5%) Query: 1 VYRIYPFDNVLYVVTVTGQELRAYMEVSATHFNQWQPGDREITANPEVPSYLYDMFAGID 60 V IY F N L V +TG+ L YME S +NQ QPGD I+ N V Y +DMF+G+ Sbjct: 385 VAYIYKFANTLIGVRITGENLLKYMEWSYKFYNQLQPGDLTISFNENVRGYNFDMFSGVK 444 Query: 61 YQIDLSQPAGHRIINVLYQGQPLADTQQLQLAVNNYRYSSLLKASKLVSRAKHW------ 114 YQ+D+++PAG RIIN G+P+ +LA+NNYR+ +L KLV+ A + Sbjct: 445 YQVDVTKPAGQRIINPTINGKPINPKAVYKLAINNYRFGTLSTTLKLVTDADRYYDSYDA 504 Query: 115 -ESSCSVRDMLVSYIKEQ--GTLSPEVDNNWSIV 145 + + +RD+++ YI E+ ++PE+++NW I+ Sbjct: 505 LQDNGQIRDLIIKYITEEKNAKVTPELEHNWEII 538 >ref|NP_206904.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase (cpdB) [Helicobacter pylori 26695] pir||H64532 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) precursor - Helicobacter pylori (strain 26695) gb|AAD07174.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase (cpdB) [Helicobacter pylori 26695] Length = 581 Score = 121 bits (303), Expect = 6e-27, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 9/154 (5%) Query: 1 VYRIYPFDNVLYVVTVTGQELRAYMEVSATHFNQWQPGDREITANPEVPSYLYDMFAGID 60 V IY F N L V +TG+ L YME S +NQ QPGD I+ N + Y +DMF+G+ Sbjct: 385 VTYIYKFANTLIGVRITGENLLKYMEWSYRFYNQLQPGDLTISFNENIRGYNFDMFSGVK 444 Query: 61 YQIDLSQPAGHRIINVLYQGQPLADTQQLQLAVNNYRYSSLLKASKLVSRAKHWESSC-- 118 YQ+D+++PAG RIIN +P+ +LA+NNYR+ +L LV+ A + +S Sbjct: 445 YQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNYRFGTLSTTLNLVTDADRYYNSYDE 504 Query: 119 -----SVRDMLVSYIKEQ--GTLSPEVDNNWSIV 145 +RD+++ YI E+ G ++PE++ NW I+ Sbjct: 505 LQDNGQIRDLIIKYITEEKGGKVTPELEGNWEII 538 >ref|NP_782560.1| CLV1 receptor kinase [Clostridium tetani E88] gb|AAO36497.1| CLV1 receptor kinase [Clostridium tetani E88] Length = 690 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 16/157 (10%) Query: 4 IYPFDNVLYVVTVTGQELRAYMEVSATHFNQWQPGDREITANPEVPSYLYDMFAGIDYQI 63 IY FDN LY++ VTG++L+ YME SA+++N ++PGD ++ N +V Y YDMF+G+ Y+I Sbjct: 410 IYKFDNTLYLLEVTGKQLKDYMEWSASYYNTYKPGDLTVSFNEDVRGYNYDMFSGVKYEI 469 Query: 64 DLSQPAGHRIINVLYQGQPLA-DTQQLQLAVNNYRYSSLL-----------KASKLVSRA 111 D+S+ G+RI N+ L DT+ L+L VNNYR SS L KL+ Sbjct: 470 DISKEPGNRITNLRKMDNSLVKDTETLKLIVNNYRASSHLLNPNSGIFKDGSLPKLIE-- 527 Query: 112 KHWESSCSVRDMLVSYIKE--QGTLSPEVDNNWSIVG 146 K +RD++ YIKE +G ++P+++NNW I G Sbjct: 528 KDALDGTPIRDLIGRYIKEVKKGVITPQMNNNWKISG 564 >ref|NP_971480.1| phosphatase/nucleotidase [Treponema denticola ATCC 35405] gb|AAS11361.1| phosphatase/nucleotidase [Treponema denticola ATCC 35405] Length = 632 Score = 118 bits (296), Expect = 3e-26, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 93/151 (61%), Gaps = 8/151 (5%) Query: 4 IYPFDNVLYVVTVTGQELRAYMEVSATHFNQWQPGDREITANPEVPSYLYDMFAGIDYQI 63 IY + N L V +TG+ L YME SA+++N + GD I+ +P++ SY YDMF G+ Y I Sbjct: 440 IYKYANTLMGVNITGENLLKYMEWSASYYNTTKKGDVTISFDPKIRSYNYDMFEGLTYDI 499 Query: 64 DLSQPAGHRIINVLYQGQPLADTQQLQLAVNNYRYSSLLKASKLVSRAKHWES------S 117 D+SQ +RI N +G+P+ + +LAVNNYR+ +L K + + +++S + Sbjct: 500 DISQAPENRIKNARIKGKPIDPKKNYKLAVNNYRFGTLTKLGLISEKDVYYDSYMKMQDA 559 Query: 118 CSVRDMLVSYIKE--QGTLSPEVDNNWSIVG 146 +RD++V Y+KE +G + P +NNW I+G Sbjct: 560 GRIRDLIVKYVKEVSKGVIKPVTNNNWKIIG 590 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 229,234,466 Number of extensions: 8504607 Number of successful extensions: 18943 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 18827 Number of HSP's successfully gapped: 76 Length of query: 150 Length of database: 757,237,578 Length adjustment: 109 Effective length of query: 41 Effective length of database: 461,291,787 Effective search space: 18912963267 Effective search space used: 18912963267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)