BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0010.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oc... 138 2e-31 ref|NP_244547.1| sugar ABC transporter (sugar-binding protein) [... 130 6e-29 ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [The... 113 8e-24 ref|NP_624619.1| probable solute-binding protein [Streptomyces c... 102 2e-20 ref|NP_631092.1| putative sugar-binding lipoprotein. [Streptomyc... 100 1e-19 >ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15079.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] Length = 435 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 118/430 (27%), Positives = 191/430 (44%), Gaps = 34/430 (7%) Query: 21 TSCGGAEANNGGTQGQEAAAADSK--KSVTLWIFDADPMY-----QSXXXXXXXXVGVEL 73 +C G E N +A+ DSK K + LW + + Q G+++ Sbjct: 21 VACSGEEDEN-------SASGDSKTVKFMHLWPEGSSAQHYKVVNQIIEDFETENEGIDI 73 Query: 74 KYEYIQDETYKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTLESTGLGAQ 133 + E + +E YK K+ V +NELPDV A Y P + A L+D LE L + Sbjct: 74 ELEVLSNEQYKEKIKVQSTSNELPDVGMTWAA-GYMEPFVDGNMFASLDDILEEDNLSEE 132 Query: 134 FLDNQL-VTEEDGNIYSVPS--NISTTLVLYYNKKLISELGAAAPATWDDLQALIKTAND 190 F+ D Y +P NIS+ +YYNK + E G P T D+ ++ T N+ Sbjct: 133 FVAGTTDAFSIDDTAYGLPLELNISS---IYYNKAIFDEYGLEEPTTLDEFNQVVDTLNE 189 Query: 191 KGMIPIALGGKERWQGDLLYDMLVAR--EDVDAFDKAINGQAKFTDTPFVEAANKVVTLV 248 +IP+ALG ++ W G + Y L R D D AI+ F D ++AA + LV Sbjct: 190 NDVIPVALGNRDAWTGSMWYMYLANRLGGDEDVLTSAIDRSGSFEDPALLKAAEHLQGLV 249 Query: 249 NSNAFQKGFLGSAYLDAQELFKNDKAVMWIDGSFNFSSLST------AMGDNLGYIAFPK 302 N N+F GF G A +A+ +F +A M++ +++ + +T D++GY FP+ Sbjct: 250 NDNSFVSGFNGLADQEAKSMFMESQAAMYLIATWDLPNYTTNEDVPQEFRDSVGYFPFPQ 309 Query: 303 TGAEDVLSATIGFQNAQAPYSLFVNNSSANLDKAKEFAIRLSLKLNDEFVRK-GLPGYAK 361 ++ +G LFV+ +S ++AK F + + V + G+ K Sbjct: 310 VDGSGDFNSYVGGPGV----GLFVSENSEVKEEAKTFVSYFVKEWGERAVTEVGIIPATK 365 Query: 362 SEVKSESQNKELSAYAADINKTSKTQAMWFGLLSADVGQEYRDLTQALYGGQLTADEFTA 421 + ++ + D+N S +SA Q + D+ QAL+GG++T +EF Sbjct: 366 IDGEALDLPELYVEVLDDLNNASNITLYADVQMSASAAQVHLDMIQALFGGEITPEEFVK 425 Query: 422 QLETLLRTAE 431 E L E Sbjct: 426 THEETLANEE 435 >ref|NP_244547.1| sugar ABC transporter (sugar-binding protein) [Bacillus halodurans] pir||H84109 sugar ABC transporter (sugar-binding protein) BH3680 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07399.1| sugar ABC transporter (sugar-binding protein) [Bacillus halodurans] Length = 438 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 107/378 (28%), Positives = 187/378 (49%), Gaps = 39/378 (10%) Query: 71 VELKYEYIQDETYKTKLSVALAANELPDV-FQQHAGKSYRTPVLQSKTVAPLNDTLESTG 129 + ++ E +++E YK KL V ++N+LPDV AG + P + K PL+D LE G Sbjct: 75 ITVELEVLENEQYKNKLQVISSSNQLPDVGMTWPAG--FLEPYVNGKLFTPLDDILED-G 131 Query: 130 LGAQFLDNQLVTEE-DGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTA 188 L QF+ + E DG Y++P ++ V +YNK + E G AP T+++ ++ T Sbjct: 132 LREQFVAGTVEAYEIDGQAYALPLELNIAPV-FYNKAIFDEYGLEAPETYEEFIHVVDTL 190 Query: 189 NDKGMIPIALGGKERWQGDLLYDMLVAR-EDVDAFDKAINGQAKFTDTPFVEAANKVVTL 247 + G+ PIALG ++RW G L Y + R DA + AI+ F D ++AA + L Sbjct: 191 VENGVTPIALGNRDRWTGSLWYMYMAERIGGADALNSAIDRSGSFEDERLIDAAAHIQEL 250 Query: 248 VNSNAFQKGFLGSAYLDAQELFKNDKAVMWIDGSFNFSSLST------AMGDNLGYIAFP 301 ++ +AF +GF G + +A+ F N A M++ GS++ + +T D + + FP Sbjct: 251 IDRDAFIRGFNGLSDQEAKAEFMNGGAAMYLIGSWDLPNYTTNEEVPQEFRDGISFFKFP 310 Query: 302 KT-GAEDVLSATIGFQNAQAPYSLFVNNSSANLDKAKEFAIRLSLKLNDEFVRKG--LPG 358 G E +++ +G LFV +S ++AK+F + V +PG Sbjct: 311 TIDGGEGDINSWVGGPGV----GLFVAENSDVKEEAKQFVKYFIEEWGKYSVEDAGVIPG 366 Query: 359 YAKSEVKSESQN---------KELSAYAADINKTSKTQAMWFGLLSADVGQEYRDLTQAL 409 ++V ++ + EL+ +A+DI + Q +SA V + + ++ Q+L Sbjct: 367 ---TQVNTDEVDLPDLFIDVLDELN-HASDITLFADVQ------MSASVAETHLNMIQSL 416 Query: 410 YGGQLTADEFTAQLETLL 427 +G ++T + F + E L Sbjct: 417 FGHEVTPEAFAEEHEKAL 434 >ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] gb|AAM25486.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] Length = 453 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 178/382 (46%), Gaps = 41/382 (10%) Query: 71 VELKYEYIQDETYKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLN-DTLESTG 129 V+++ E +QDE YK K V A+NE+PD+F S+ PV+++ V + D ++ G Sbjct: 85 VKIEVEALQDEPYKQKFKVYAASNEMPDIFMVWGQPSFFLPVMKAGLVEEIKMDQIKDYG 144 Query: 130 LGAQFLDNQLVTEEDGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTAN 189 L + + +G +Y +P N + +VLYYNK L + P T+D+L +KT Sbjct: 145 FKTSSLKDFMY---EGKLYGLPRN-TDFMVLYYNKGLFDKYSVNVPNTFDELLGAVKTFR 200 Query: 190 DKGMIPIALGGKERWQGDLLYDMLVARE--DVDAFDKAINGQAKFTDTP-FVEAANKVVT 246 + PI++ GK++W +LY LV +E D + + ++ + + P ++AA V Sbjct: 201 KNNIAPISINGKDKWSLAILYQDLVLKESGDQEYIYRVLSEKNNISKDPILLKAAKDFVE 260 Query: 247 LVNSNAFQKGFLGSAYLDAQELFKNDKAVMWIDGSFNF-----SSLSTAMGDNLGYIAFP 301 LVN+ FQ F+ + Y A LF +KA M+ GS+ + S + NL FP Sbjct: 261 LVNAGGFQDSFIAADYGAANNLFAQEKAAMYYMGSWEVGMATNPNFSDSFKKNLDVTYFP 320 Query: 302 -----KTGAEDVLSATIGFQNAQAPYSLFVNNSSANLDKAKEFAIRLSLKLNDEFVRKG- 355 K D+L+ G Y++ SS + K + + L + + + + G Sbjct: 321 IISGGKAKNTDILAWHGG------GYAV----SSKSPVKEEAMKLLLFMMEPNRWTKIGW 370 Query: 356 -----LPGYAKSEV----KSESQNKELSAYAADINKTSKTQAMWFGLLSADVGQEYRDLT 406 +PG S+ ++E Q K +++ TS + +W + + E L Sbjct: 371 QEGLVVPGQDWSKFMTGNETELQKKLTQIFSS---ATSVSGTVWQDSYTPNFKTEAETLI 427 Query: 407 QALYGGQLTADEFTAQLETLLR 428 Q L +T ++F ++LE L + Sbjct: 428 QMLAAKTITPEQFLSKLEELAK 449 >ref|NP_624619.1| probable solute-binding protein [Streptomyces coelicolor A3(2)] pir||T36478 probable solute-binding protein - Streptomyces coelicolor emb|CAB54175.1| probable solute-binding protein [Streptomyces coelicolor A3(2)] Length = 436 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 20/238 (8%) Query: 79 QDETYKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTLES-----TGLGAQ 133 Q++ YKTK+ A+ A P + G + RT ++ V L + GL Sbjct: 72 QNDAYKTKIKTAIGAGRAPTIIWGWGGGTLRT-YAEAGQVEDLTSWFDEHAEVKKGL--- 127 Query: 134 FLDNQLVTEEDGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTANDKGM 193 F + DG IY++P ++LYYNKK+ ++G P +WDDL AL+ N KG+ Sbjct: 128 FPSSFGAATVDGKIYAMPCETVQPIILYYNKKIFDQVGVEPPESWDDLMALVPRFNAKGI 187 Query: 194 IPIALGGKERWQGDLLYDMLVAR-EDVDAFDKAINGQAKFTDTP-FVEAANKVVTLVNSN 251 P++LGG+ RW + + L R + F I G+ P + A KV LV ++ Sbjct: 188 APLSLGGQSRWTNMMWLEFLFDRIGGPEVFQAVIEGEKDAWSHPDAITALTKVQELVRAD 247 Query: 252 AFQKGFLGSAYLDA---QELFKNDKAVMWIDGSFNFSSLSTAMGD-----NLGYIAFP 301 F KGF S D+ Q L +A M + G++++ GD LGY+ FP Sbjct: 248 GFIKGF-SSITADSNADQALLYTGRAAMMLHGAWSYGIQQADGGDFVSSGGLGYMNFP 304 >ref|NP_631092.1| putative sugar-binding lipoprotein. [Streptomyces coelicolor A3(2)] emb|CAB88161.1| putative sugar-binding lipoprotein. [Streptomyces coelicolor A3(2)] Length = 434 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 163/365 (44%), Gaps = 32/365 (8%) Query: 83 YKTKLSVALAANELPDVFQQHAGKSYRTPVLQSKTVAPLNDTLES-TGLGAQFLDNQLVT 141 Y+TKL + + PD+F G S + P +++ + PL+D ++ GL FL + + Sbjct: 78 YQTKLQTIINTPQAPDIFYNWGGGSIK-PFVKADLLLPLDDFIKKDPGLKDNFLPSVFNS 136 Query: 142 EE-DGNIYSVPSNISTTLVLYYNKKLISELGAAAPATWDDLQALIKTANDKGMIPIALGG 200 DG Y +P + ++L++NKK++ + G P TWD+L A + D G+ PIALGG Sbjct: 137 AVVDGKPYGIPMRGTQPVLLFHNKKVLEDAGVQPPKTWDELLAAVGKLKDAGVTPIALGG 196 Query: 201 KERWQGDL----LYDMLVAREDVDAFDKAING-QAKFTDTPFVEAANKVVTLVNSNAFQK 255 + W + LYD + E F KAI G ++ + +A + + LV+S AF K Sbjct: 197 GDVWPTQMWFQYLYDRIAGPE---LFAKAIGGDKSAWESADSKKALDMISELVDSGAFGK 253 Query: 256 GFLGSAYLD--AQELFKNDKAVMWIDGSFNFSSLSTAMGD----NLGYIAFPKT-GAEDV 308 + Y + + +L + KA + GS+ +S T + +LGY AFP G + Sbjct: 254 NYDSVKYTNGGSVQLVASGKAGFELMGSWYYSQQLTDHKEFAEKDLGYTAFPTVEGGKGD 313 Query: 309 LSATIGFQNAQAPYSLFVNNSSANLDKAKEFAIRLSLKLNDEFVRK-----GLPGYAKSE 363 G N YS V + + + A EF L L +DEFV+ LP ++ Sbjct: 314 PGNVAG--NPNNYYS--VMKKTKHPEAAAEF---LKLMYSDEFVKAHLDIGNLPTTTNTD 366 Query: 364 -VKSESQNKELSAYAAD-INKTSKTQAMWFGLLSADVGQEYRDLTQALYGGQLTADEFTA 421 +S E + + D ++ Q W + Q + GQL D F Sbjct: 367 KFIDDSATPEYTRFQYDLVSDAPNFQLSWDQAYPQKASSDMHKAIQQFFNGQLDTDGFIK 426 Query: 422 QLETL 426 ++ L Sbjct: 427 AMQAL 431 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.129 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 578,724,712 Number of extensions: 22747788 Number of successful extensions: 43838 Number of sequences better than 1.0e-05: 98 Number of HSP's gapped: 43830 Number of HSP's successfully gapped: 100 Length of query: 431 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 303 Effective length of database: 409,704,906 Effective search space: 124140586518 Effective search space used: 124140586518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)