BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0007.p
         (336 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_628030.1| putative dioxygenase [Streptomyces coelicolor A...    66   1e-09
gb|AAN07183.1| RNA polymerase beta prime subunit/intein-CBD fusi...    64   6e-09
dbj|BAA09831.1| chitinase [Kurthia zopfii]                             62   2e-08
ref|NP_628830.1| putative serine protease precursor [Streptomyce...    60   5e-08
emb|CAD42809.1| serine protease [Streptomyces lividans]                60   5e-08

>ref|NP_628030.1| putative dioxygenase [Streptomyces coelicolor A3(2)]
 pir||T36711 probable dioxygenase - Streptomyces coelicolor
 emb|CAB45209.1| putative dioxygenase [Streptomyces coelicolor A3(2)]
          Length = 294

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 44  YAVNDTVTYSGSTYTCLQAHTSLTGWEPPNVPALWQS 80
           Y   D VTY G +Y CLQAHT++TGWEPPNVPALWQS
Sbjct: 256 YTSGDRVTYGGRSYRCLQAHTAMTGWEPPNVPALWQS 292


>gb|AAN07183.1| RNA polymerase beta prime subunit/intein-CBD fusion protein [Cloning
            vector pIA423]
          Length = 1929

 Score = 63.5 bits (153), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 44   YAVNDTVTYSGSTYTCLQAHTSLTGWEPPNVPALWQ 79
            Y     VTY+G TY CLQ HTSL GWEP NVPALWQ
Sbjct: 1892 YTAGQLVTYNGKTYKCLQPHTSLAGWEPSNVPALWQ 1927


>dbj|BAA09831.1| chitinase [Kurthia zopfii]
          Length = 699

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 28/36 (77%)

Query: 44  YAVNDTVTYSGSTYTCLQAHTSLTGWEPPNVPALWQ 79
           Y V   VTYSG TY CLQ+HTSL GWEP NVPALWQ
Sbjct: 662 YTVGQLVTYSGKTYKCLQSHTSLPGWEPSNVPALWQ 697


>ref|NP_628830.1| putative serine protease precursor [Streptomyces coelicolor A3(2)]
 emb|CAB81861.1| putative serine protease precursor [Streptomyces coelicolor A3(2)]
          Length = 463

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 27/36 (75%)

Query: 44  YAVNDTVTYSGSTYTCLQAHTSLTGWEPPNVPALWQ 79
           Y   DTVTY G+T+ CLQ H +  GWEPPNVPALWQ
Sbjct: 426 YQPGDTVTYGGATFRCLQGHQAYAGWEPPNVPALWQ 461


>emb|CAD42809.1| serine protease [Streptomyces lividans]
          Length = 458

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 27/36 (75%)

Query: 44  YAVNDTVTYSGSTYTCLQAHTSLTGWEPPNVPALWQ 79
           Y   DTVTY G+T+ CLQ H +  GWEPPNVPALWQ
Sbjct: 421 YQPGDTVTYGGATFRCLQGHQAYAGWEPPNVPALWQ 456


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 523,107,318
Number of extensions: 22219805
Number of successful extensions: 35983
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 35994
Number of HSP's successfully gapped: 18
Length of query: 336
Length of database: 757,237,578
Length adjustment: 126
Effective length of query: 210
Effective length of database: 415,135,104
Effective search space: 87178371840
Effective search space used: 87178371840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)