BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0030.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098674.1| COG2210: Uncharacterized conserved protein [D... 221 3e-57 ref|NP_977194.1| conserved hypothetical protein [Bacillus cereus... 124 8e-28 ref|NP_654724.1| Ccd2, Conserved cysteine containing domain 2 ( ... 124 9e-28 ref|NP_830588.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]... 122 3e-27 ref|NP_693573.1| hypothetical protein OB2652 [Oceanobacillus ihe... 120 1e-26 >ref|ZP_00098674.1| COG2210: Uncharacterized conserved protein [Desulfitobacterium hafniense] Length = 255 Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/154 (67%), Positives = 130/154 (84%) Query: 1 MNLLMFSGEYDKAMAALILANTARDIDVEVTMFFSFWGLFLVRDPDKMTLEDKTIYEKLM 60 M LL+FSGEYDKA+A LILAN+ R++ ++VTMFF+FWGL LVRDP+KMTLEDK++YE++ Sbjct: 102 MTLLIFSGEYDKALAGLILANSGREMGMDVTMFFAFWGLCLVRDPEKMTLEDKSLYEQMF 161 Query: 61 DVITPKGPEQLPLSRMNFSGLGKLMLEEMIEDQGAPKLIHFLKGARKKNIKFYACKLSVD 120 +ITPKG E LPLSRMN +GLGK ML+EM+ED P L FL GARKK +KFY CKLSVD Sbjct: 162 GMITPKGIEDLPLSRMNMAGLGKAMLKEMMEDDDTPPLTAFLNGARKKGVKFYGCKLSVD 221 Query: 121 IMGFKPEELLPEVEIIDAAAYLKDALESDMQLFI 154 +MGFK EELLPEV+I+ AA +L++A+ES +QLFI Sbjct: 222 VMGFKKEELLPEVQIMTAADFLQEAMESQIQLFI 255 >ref|NP_977194.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39802.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 159 Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 2 NLLMFSGEYDKAMAALILANTARDIDVEVTMFFSFWGLFLVRDPDKMTLEDKTIYEKLMD 61 +++FSG+YDKAMAA I+AN A D EVT+F +FWGL +R + + ++ KT EK+ Sbjct: 8 TIVLFSGDYDKAMAAYIIANGAAAYDQEVTIFHTFWGLNALRKDEHVKVK-KTFIEKVFG 66 Query: 62 VITPKGPEQLPLSRMNFSGLGKLMLEEMIEDQGAPKLIHFLKGARKKNIKFYACKLSVDI 121 + P+G +++ LS+MNF+G+G M++ +++ A L + A+++ IK AC+++VD+ Sbjct: 67 KMMPRGADKMGLSKMNFAGMGPKMMKGIMKKHNAMPLPDLIDLAKEQGIKLVACQMTVDL 126 Query: 122 MGFKPEELLPEVEIIDAAAYLKDALESDMQLFI 154 +G K EE++ VE AYL DA + ++ LFI Sbjct: 127 LGLKEEEIMEGVEFAGVGAYLADASDGNVNLFI 159 >ref|NP_654724.1| Ccd2, Conserved cysteine containing domain 2 ( a predicted disulfide bond redox regulator) [Bacillus anthracis A2012] Length = 159 Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 2 NLLMFSGEYDKAMAALILANTARDIDVEVTMFFSFWGLFLVRDPDKMTLEDKTIYEKLMD 61 +++FSG+YDKAMAA I+AN A D EVT+F +FWGL +R + + ++ KT EK+ Sbjct: 8 TIVLFSGDYDKAMAAYIIANGAAAYDQEVTIFHTFWGLNALRKDEHVEVK-KTFIEKVFG 66 Query: 62 VITPKGPEQLPLSRMNFSGLGKLMLEEMIEDQGAPKLIHFLKGARKKNIKFYACKLSVDI 121 + P+G +++ LS+MNF+G+G M++ +++ A L + A+++ IK AC+++VD+ Sbjct: 67 KMMPRGADKMGLSKMNFAGMGPKMIKGIMKKHNAMPLPDLIDLAKEQGIKLVACQMTVDL 126 Query: 122 MGFKPEELLPEVEIIDAAAYLKDALESDMQLFI 154 +G K EE++ VE AYL DA + ++ LFI Sbjct: 127 LGLKEEEIMEGVEFAGVGAYLADASDGNVNLFI 159 >ref|NP_830588.1| NADH dehydrogenase [Bacillus cereus ATCC 14579] gb|AAP07789.1| NADH dehydrogenase [Bacillus cereus ATCC 14579] Length = 159 Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 2 NLLMFSGEYDKAMAALILANTARDIDVEVTMFFSFWGLFLVRDPDKMTLEDKTIYEKLMD 61 +++FSG+YDKAMAA I+AN A D EVT+F +FWGL +R + + ++ KT EK+ Sbjct: 8 TIVLFSGDYDKAMAAYIIANGAAAYDQEVTIFHTFWGLNALRKDEYVNVK-KTFIEKVFG 66 Query: 62 VITPKGPEQLPLSRMNFSGLGKLMLEEMIEDQGAPKLIHFLKGARKKNIKFYACKLSVDI 121 + P+G +++ LS+MNF+G+G M++ +++ L + A+++ IK AC+++VD+ Sbjct: 67 RMMPRGADKMGLSKMNFAGMGPKMIKGIMKKHNTMPLPDLIDLAKEQGIKLVACQMTVDL 126 Query: 122 MGFKPEELLPEVEIIDAAAYLKDALESDMQLFI 154 +G K EE++ VE AYL DA + ++ LFI Sbjct: 127 LGLKEEEIMEGVEFAGVGAYLADASDGNVNLFI 159 >ref|NP_693573.1| hypothetical protein OB2652 [Oceanobacillus iheyensis HTE831] dbj|BAC14608.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 158 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 2 NLLMFSGEYDKAMAALILANTARDIDVEVTMFFSFWGLFLVRDPDKMTLEDKTIYEKLMD 61 +++FSG+YDKAMAA I+AN A D EVT+F +FWGL +R +++ ++ K E++ + Sbjct: 7 TIVLFSGDYDKAMAAYIIANGAAAYDHEVTIFHTFWGLNALRKEEQVPVK-KGFMERMFE 65 Query: 62 VITPKGPEQLPLSRMNFSGLGKLMLEEMIEDQGAPKLIHFLKGARKKNIKFYACKLSVDI 121 + P+G +++ LS+MN+ G+G M+++++ A L + A+++++K AC +++D+ Sbjct: 66 KMMPRGADKMGLSKMNYGGMGPKMIKQVMNKHNAMPLPDLINLAQEQDVKLIACTMTMDL 125 Query: 122 MGFKPEELLPEVEIIDAAAYLKDALESDMQLFI 154 +G + EELL ++E AAY+ DA E + LFI Sbjct: 126 LGLQKEELLDDIEYAGVAAYIGDAEEGQINLFI 158 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 218,670,733 Number of extensions: 8728216 Number of successful extensions: 19112 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 19084 Number of HSP's successfully gapped: 30 Length of query: 154 Length of database: 757,237,578 Length adjustment: 112 Effective length of query: 42 Effective length of database: 453,146,490 Effective search space: 19032152580 Effective search space used: 19032152580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)