BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0029.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_293754.1| aminotransferase, putative [Deinococcus radiodu... 358 2e-97 ref|NP_916762.1| putative aminotransferase [Oryza sativa (japoni... 297 3e-79 gb|AAF34417.1| hypothetical protein, similar to H. pilory nifS l... 285 3e-75 ref|NP_385811.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m... 271 2e-71 ref|NP_907373.1| PUTATIVE AMINOTRANSFERASE [Wolinella succinogen... 257 6e-67 >ref|NP_293754.1| aminotransferase, putative [Deinococcus radiodurans] pir||E75569 probable aminotransferase - Deinococcus radiodurans (strain R1) gb|AAF09620.1| aminotransferase, putative [Deinococcus radiodurans] Length = 544 Score = 358 bits (919), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 203/480 (42%), Positives = 279/480 (58%), Gaps = 12/480 (2%) Query: 20 FAAFREHTIGGRHVISTPYGRQPLLYADWTASGRLYEPLERKIQESFGPYVSNPHTESNT 79 FA+ R IG VI TP+G + + YAD+ ASGR +E +++ P +N HTE + Sbjct: 15 FASLRADLIGSEAVIRTPFGERRVTYADYVASGRALRSVEDQVRRLALPLYANTHTEDSA 74 Query: 80 TGLTMTLAYNEARKIIRDHVNAGPDDALLFCGNGTTGAINKLQRLMGLKLPEWLQEDYL- 138 TG T +EA + ++ + A L+FCG+G+T A+ ++Q ++GL + + L Sbjct: 75 TGAHSTHLTHEAHEYVKAQLGADASCKLVFCGSGSTAAVRRMQDILGLSVGCAHRLTVLD 134 Query: 139 CVPE-ERPVIFVSHMEHHSNLLPWQEGIGDVVTVPAGADGTADLKELERLLMLYR-NRRF 196 +PE ERPV+FV EHHSN + W+E + +VV +P A G DL L L R RR Sbjct: 135 ALPEHERPVVFVGPYEHHSNEVSWRETLAEVVEIPLCARGNLDLDALITALKDPRYARRP 194 Query: 197 KIGSFTACSNVTGIHTPYHRLAAAMHRHGGVCFVDFAACAPYVSINMHPADPLEKLDAIF 256 KIGSF+A SNVTG+ T +A +HRHG F DFAA APYV+I+M P P + DA+F Sbjct: 195 KIGSFSAASNVTGLLTDTRTVARILHRHGAYAFFDFAASAPYVAIDMKPGQP-DGYDAVF 253 Query: 257 FSPHKFLGGPGTGGVLIFDSGLSRGQLPDEPGGGTVVWVDAWGGRRYIHSVEVREDSGTP 316 SPHKF+GGPGT G+L F + L R P GGGTV +V + ++ +E RED+GTP Sbjct: 254 LSPHKFVGGPGTPGLLCFRAELYRLSSPSTAGGGTVRYV-SRTKHTFVDDIEAREDAGTP 312 Query: 317 GFLQAFRTALCLKLKEAMNGDGGFMLARDQQLCGRLLTGLHSIPGCTILAGEHTRRHGIV 376 L RTAL ++KE + + R+ +L GR +T L P +L R + Sbjct: 313 AILGKIRTALAFRVKEELGVRA--LTEREHELFGRAVTRLGIHPRVQLLGNPDAPRLAFL 370 Query: 377 SF--NLED---IHYNLVVRLLNDRFGIQARGGCSCAGPYGHHLLGLDRELSREFIQAIHA 431 SF ED +H VVRLLND FGIQARGGC+CAGPYGH LL +D E S + Q + + Sbjct: 371 SFLVKAEDGTYLHPRFVVRLLNDLFGIQARGGCACAGPYGHALLDIDDERSERYFQCVMS 430 Query: 432 GDQSLKPGWVRLSLHPIMTDDEVEFMIHAVHSIVRHISVWRQDYRYNRSTNSWVHPADAA 491 LKPGW RL+L P TD+EV+F++ A+ + H + Y ++ T +W HP DAA Sbjct: 431 DLDGLKPGWTRLNLAPWATDEEVDFLLSAIEFVAEHGEKFLPLYDFDWKTGAWTHPQDAA 490 >ref|NP_916762.1| putative aminotransferase [Oryza sativa (japonica cultivar-group)] dbj|BAB21164.1| putative aminotransferase [Oryza sativa (japonica cultivar-group)] dbj|BAB63515.1| putative aminotransferase [Oryza sativa (japonica cultivar-group)] Length = 616 Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 181/500 (36%), Positives = 257/500 (51%), Gaps = 28/500 (5%) Query: 7 ASTAEEPVSLLEHFAAFREHTIGGRHVISTPYGRQPLLYADWTASGRLYEPLERKIQESF 66 ++ A++P LE R IG ++P+G + + YAD TASGR +E +Q + Sbjct: 50 SADADDPARKLEWL---RSQVIGADAEFASPFGTRRVTYADHTASGRCLRFVEDFVQRNV 106 Query: 67 GPYVSNPHTESNTTGLTMTLAYNEARKIIRDHVNAGPDDALLFCGNGTTGAINKLQRLMG 126 PY N HT + GL + +EA K ++ + AG +D LLFCG G T AI +LQ + G Sbjct: 107 LPYYGNTHTVDSYVGLHTSKLASEAAKYVKRSLGAGAEDVLLFCGTGCTAAIKRLQEVTG 166 Query: 127 LKLPEWLQEDYLCV--PEERPVIFVSHMEHHSNLLPWQEGIGDVVTVPAGADGTADLKEL 184 + +P L+ L V P ER V+FV EHHSNLL W+E + +VV + D + Sbjct: 167 MAVPPTLRSVALDVLPPSERWVVFVGPYEHHSNLLTWRESLAEVVEIGLRPDDGHLDLDA 226 Query: 185 ERLLMLYRNR--RFKIGSFTACSNVTGIHTPYHRLAAAMHRHGGVCFVDFAACAPYVSIN 242 + R R +GSF+ACSNVTGI T +A +H +G DFA APYV I+ Sbjct: 227 LEAALAAPERAGRPMLGSFSACSNVTGIRTDTRAVARLLHGYGAYACFDFACSAPYVGID 286 Query: 243 MHPADPLEKLDAIFFSPHKFLGGPGTGGVLIFDSGLSRGQ--LPDEPGGGTVVWVDAWGG 300 M + + DA++ SPHKFLGGPG+ GVL L R + P GGGTVV+V A+G Sbjct: 287 MRSGEE-DGYDAVYLSPHKFLGGPGSPGVLAMAKRLYRLRRTAPSTSGGGTVVYVSAYGD 345 Query: 301 RRYIHSVEVREDSGTPGFLQAFRTALCLKLKEAMNGDGGFMLARDQQLCGRLLTGLHSIP 360 Y E RED+GTP +Q R AL ++KE + + AR+ + L + + P Sbjct: 346 TVYCEDTEEREDAGTPAIIQKVRAALAFRVKEWVGE--ACIEAREDHMLALALRRMQASP 403 Query: 361 GCTILAG----------------EHTRRHGIVSFNLEDIHYNLVVRLLNDRFGIQARGGC 404 +L G ++ R G +H V +LLND FG+QARGGC Sbjct: 404 NLRLLLGGDRPSGGRCLPVLSFVVYSPRDGSEQDERPQLHCRFVTKLLNDLFGVQARGGC 463 Query: 405 SCAGPYGHHLLGLDRELSREFIQAIHAGDQSLKPGWVRLSLHPIMTDDEVEFMIHAVHSI 464 SCAGPYGH LLG+ ++ A+ G ++PGW R+SL + E EF++ A+ + Sbjct: 464 SCAGPYGHRLLGITPARAKAIKSAVEKGYHGVRPGWTRVSLAYYTSTREAEFVLDAIDFV 523 Query: 465 VRHISVWRQDYRYNRSTNSW 484 + Y ++ T W Sbjct: 524 ASFGHRFLPLYAFDWETGDW 543 >gb|AAF34417.1| hypothetical protein, similar to H. pilory nifS like protein [Oryza sativa] Length = 659 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 202/534 (37%), Positives = 270/534 (50%), Gaps = 62/534 (11%) Query: 5 NRASTAEEPVSLLEHFAAFREHTIGGRHVISTPYGRQPLLYADWTASGRLYEPLERKIQE 64 R++ AEE V + R +G TP+GR+PL+YAD TASGR +E + Sbjct: 40 ERSAEAEEKVEWV------RSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLH 93 Query: 65 SFGPY---------------------------------VSNPHTESNTTGLTMTLAYNEA 91 P+ V N HTE + G T +A Sbjct: 94 HVLPFYGQYHLPCRFSSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKA 153 Query: 92 RKIIRDHVNAGP----DDALLFCGNGTTGAINKLQRLMGLKLPEW-LQEDY--LCVPEER 144 I+ V AG D ALLFCG+G T A+ +LQ MG+ P L+E L PEER Sbjct: 154 ASYIKRCVGAGGAAGGDVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAALLRPEER 213 Query: 145 PVIFVSHMEHHSNLLPWQEGIGDVVTVPAGADGTADLKELERLLMLYRNR-RFKIGSFTA 203 V+FV EHHSNLL W+ + DVV V AG DG DL L R L + R +GSF+A Sbjct: 214 WVVFVGPYEHHSNLLSWRRSLADVVEVGAGDDGLLDLAALRRALRAPEHADRPMLGSFSA 273 Query: 204 CSNVTGIHTPYHRLAAAMHRHGGVCFVDFAACAPYVSINMHPADPLEKLDAIFFSPHKFL 263 CSNVTG+ T +A +H+HG DFAA PYV I+M P + ++ DA+F SPHKF+ Sbjct: 274 CSNVTGVLTDTRAVARLLHQHGAFACFDFAASGPYVEIDMRPGE-VDGYDAVFLSPHKFV 332 Query: 264 GGPGTGGVLIFDSGLSR--GQLPDEPGGGTVVWVDAWGGRR--YIHSVEVREDSGTPGFL 319 GGPGT G+L+ L R Q P GGGTV +V+ R Y+ VE RED+GTP + Sbjct: 333 GGPGTPGILLMSRSLYRLSSQPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIV 392 Query: 320 QAFRTALCLKLKEAMNGDGGFMLARDQQLCGRLLTGLHSIPGCTILAGEHTRRHGIVSF- 378 R AL +K A G GG + R++ + L P +L R I SF Sbjct: 393 GKVRAALAFWVK-ARVGRGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPRLPIFSFL 451 Query: 379 ----NLED----IHYNLVVRLLNDRFGIQARGGCSCAGPYGHHLLGLDRELSREFIQAIH 430 + +D +H V +LLND FG+QARGGC+CAGPYGH LLG+ ELS AI Sbjct: 452 VFPGDGDDRRLPLHGRFVAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIV 511 Query: 431 AGDQSLKPGWVRLSLHPIMTDDEVEFMIHAVHSIVRHISVWRQDYRYNRSTNSW 484 G +KPGW R+S ++ DE+ +++ A+ + H + Y ++ +T W Sbjct: 512 RGYHGVKPGWTRVSFAYYLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDW 565 >ref|NP_385811.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] emb|CAC46284.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 499 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 170/479 (35%), Positives = 250/479 (52%), Gaps = 19/479 (3%) Query: 23 FREHTIGGRHVISTPYGRQPLLYADWTASGRLYEPLERKIQESFGPYVSNPHTESNTTGL 82 R+ +G I PYG + L+YAD+ ASGR +ER I E P+ +N HTE++ G Sbjct: 31 LRDDLVGATSQIEGPYGIRNLVYADYVASGRALLTVERFILEDVLPFYANSHTEASYCGG 90 Query: 83 TMTLAYNEARKIIRDHVNAGPDDALLFCGNGTTGAINKLQRLMGLKLPEWLQEDYLCVPE 142 MT EAR +I + A A++F G+G T +N+L +L G+ + + + Sbjct: 91 FMTRMRREARALIAECCGADERHAVIFTGSGATSGLNRLVKLFGVT-------EAIAAGK 143 Query: 143 ERPVIFVSHMEHHSNLLPWQEGIGDVVTVPAGADGTADLKELERLLMLYRNRRFKIGSFT 202 VI + EHHSN+LPW+E ++V + G DL L++ L + I + + Sbjct: 144 TVRVI-IGPYEHHSNILPWRESGAEIVELTESPMGGPDLFLLDQALRT-GSPDLTICTLS 201 Query: 203 ACSNVTGIHTPYHRLAAAMHRHGGVCFVDFAACAPYVSINMHPADPLEKLDAIFFSPHKF 262 A SN+TGI + + + G D+A PYV I+M P+ E +DAI SPHKF Sbjct: 202 AASNITGITSDVAAITDLVKSAGAKMIWDYAGAGPYVPISMSPSGSAE-IDAIVLSPHKF 260 Query: 263 LGGPGTGGVLIFDSGLSRGQLPDEPGGGTVVWVDAWGGRRYIHSVEVREDSGTPGFLQAF 322 +GGPG G+LI P PGGGTV +V Y S+E RE++GTP + Sbjct: 261 IGGPGASGILIVRRDGPATNKPSWPGGGTVKFVSPET-HDYSDSLEAREEAGTPNVVGDI 319 Query: 323 RTALCLKLKEAMNGDGGFMLARDQQLCGRLLTGLHSIPGCTILAGEHTRRHGIVSFNLED 382 R AL +K A+ M R++QL R + +P IL R I SF + + Sbjct: 320 RAALAFVVKHAIGLKE--MARRNRQLTVRAFSAWKDVPQLEILGLPALDRLPIFSFRIRN 377 Query: 383 -----IHYNLVVRLLNDRFGIQARGGCSCAGPYGHHLLGLDRELSREFIQAIHAGDQSLK 437 +H LV R+L+DRFGIQARGGC+CAGPY H LL +D + S + QAI AGD+ K Sbjct: 378 GKGGYMHQQLVTRMLSDRFGIQARGGCACAGPYVHRLLSIDAQQSEQMRQAILAGDEIKK 437 Query: 438 PGWVRLSLHPIMTDDEVEFMIHAVHSIVRHISVWRQDYRYNRSTNSWVHPADAAGNKAA 496 PG+ RL+ +++D++V+F++ +V + + DY ++ + P AA N A Sbjct: 438 PGFTRLNFSVLLSDEKVKFILDSVAKLAADAPAFEPDYDFD-PARAIFFPRVAAENGGA 495 >ref|NP_907373.1| PUTATIVE AMINOTRANSFERASE [Wolinella succinogenes] emb|CAE10273.1| PUTATIVE AMINOTRANSFERASE [Wolinella succinogenes] Length = 437 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 161/426 (37%), Positives = 227/426 (53%), Gaps = 26/426 (6%) Query: 45 YADWTASGRLYEPLERKIQESFGPYVSNPHTESNTTGLTMTLAYNEARKIIRDHVNAGPD 104 Y D+TASG Y +E +I S P +N H+E L MT Y+EAR ++ H++ + Sbjct: 33 YFDFTASGLAYRTIEERIA-SILPRYANTHSEVTNHALFMTELYDEARANLKRHMDLDEE 91 Query: 105 DALLFCGNGTTGAINKLQRLMGLKLPEWLQEDYLCVPEER--PVIFVSHMEHHSNLLPWQ 162 AL CGNG+TGAI K Q LMGL LP Q+ P+ PV+FV EHHSN + ++ Sbjct: 92 FALFPCGNGSTGAIKKFQELMGLYLPPRTQKRLSLTPDPALFPVVFVGPYEHHSNEVSYR 151 Query: 163 EGIGDVVTVPAGADGTADLKELERLLMLYRNRRFKIGSFTACSNVTGIHTPYHRLAAAMH 222 E +VV +P + G D+ L L Y+ R I SF+ SNVTGI PY ++A + Sbjct: 152 ESPCEVVRIPLDSRGLVDMGVLRAKLGEYQGREI-ITSFSLASNVTGIIIPYEEISALIR 210 Query: 223 RHGGVCFVDFAACAPYVSINMHPADPLEKLDAIFFSPHKFLGGPGTGGVLIFDSGLSRGQ 282 + GG+ D A + Y++I P + DA FFSPHK LGG G+ G+L L Sbjct: 211 KAGGIVTFDMATASSYMNI------PSKFFDAAFFSPHKLLGGVGSCGLLAMRKSLIDST 264 Query: 283 LPDE-PGGGTVVWVDAWGGRRYIHSVEVREDSGTPGFLQAFRTALCLKLKEAMNGDGGFM 341 LP GGGTV +V + Y E RED+GTPG LQ R +L +L+ + + F+ Sbjct: 265 LPPTFAGGGTVTYVSRI-DQYYREDPEYREDAGTPGVLQLLRASLAYQLRNEVGLE--FI 321 Query: 342 LARDQQLCGRLLTGLHSIPGCTILAG-EHTRRHGIVSFNLEDIHYNLVVRLLNDRFGIQA 400 R ++LC L+ L + I E R GI + N+E I V + L+ + I+ Sbjct: 322 AKRKKELCAPLVEALRKMERVKIYGDIESCNRLGIFAINIEGISPYEVCQRLSREYLIET 381 Query: 401 RGGCSCAGPYGHHLLGLDRELSREFIQAIHAGDQSLKPGWVRLSLHPIMTDDEVEFMIHA 460 R GCSCAGPYGH LLGL + G + +PGWVR+S+H + +++E ++ A Sbjct: 382 RAGCSCAGPYGHDLLGLKDD-----------GLFASRPGWVRISVHYSHSLEQIERLLGA 430 Query: 461 VHSIVR 466 + I R Sbjct: 431 LEEIAR 436 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 828,283,644 Number of extensions: 37354238 Number of successful extensions: 67076 Number of sequences better than 1.0e-05: 422 Number of HSP's gapped: 66698 Number of HSP's successfully gapped: 422 Length of query: 503 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 373 Effective length of database: 404,274,708 Effective search space: 150794466084 Effective search space used: 150794466084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)