BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0024.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_797085.1| ABC transporter, ATP-binding protein [Vibrio pa... 275 8e-73 ref|ZP_00061761.1| COG1135: ABC-type metal ion transport system,... 275 8e-73 ref|NP_230554.1| ABC transporter, ATP-binding protein [Vibrio ch... 272 4e-72 ref|NP_981418.1| ABC transporter, ATP-binding protein [Bacillus ... 271 8e-72 ref|NP_759298.1| ABC-type metal ion transport system, ATPase com... 271 8e-72 >ref|NP_797085.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC58969.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus] Length = 344 Score = 275 bits (703), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 138/241 (57%), Positives = 174/241 (72%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI +K+++K + + AL+DINL IAKG IFG+IG+SGAGKSTLIRC+N LE P SG Sbjct: 1 MIEIKNVNKVFYQGSKEILALKDINLHIAKGTIFGVIGSSGAGKSTLIRCVNMLEAPSSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 SI + GV +T IGMIFQ FNLL ++TV+ NVA PL +AG K + Sbjct: 61 SIIVDGVDLTTLSKKQLVETRRNIGMIFQHFNLLSSRTVFDNVALPLELAGKDKSQITTK 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L+LVGL+ K YPS LSGGQKQRV IARALA++P VLL DEATSALDP TT SIL Sbjct: 121 VTELLKLVGLADKHESYPSNLSGGQKQRVAIARALASDPSVLLCDEATSALDPATTQSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL++INRKLN+TI+LITHEM+V++ IC A+I GG +VE G V +F P++E A +F Sbjct: 181 ELLKEINRKLNITILLITHEMEVVKSICHEVAIIGGGELVEKGTVGDIFAHPKTELAHEF 240 Query: 241 V 241 + Sbjct: 241 I 241 >ref|ZP_00061761.1| COG1135: ABC-type metal ion transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 273 Score = 275 bits (703), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 134/247 (54%), Positives = 174/247 (70%) Query: 2 IAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSGS 61 I + LHK++ TR G + L+ I+L + KGEIFGIIG SGAGKSTL RC+NRLE PDSGS Sbjct: 16 IQISGLHKTFHTRSGPIQVLKGIDLTVRKGEIFGIIGFSGAGKSTLARCINRLETPDSGS 75 Query: 62 IEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKERV 121 I++GGV I IGMIFQ FNL +AKTVY N+++PL ++ K ++RV Sbjct: 76 IKVGGVEILNLSKKQLLQERKKIGMIFQTFNLFEAKTVYHNISYPLEISKIPKPEIRKRV 135 Query: 122 VEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSILE 181 +E ELVGLS K N YP LSGGQKQRVGIARAL + P++L+SDEATSALDPQTT IL+ Sbjct: 136 LETAELVGLSDKLNAYPGGLSGGQKQRVGIARALVSRPNLLISDEATSALDPQTTLQILD 195 Query: 182 LLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQFV 241 LL++INR +TI++ITHE+D +R+ C AV+E G+I+E G V ++F P S T F Sbjct: 196 LLKEINRTTGITILMITHELDAIRYTCDRMAVLEDGKIIEVGTVREIFNNPLSRTGALFT 255 Query: 242 NIFNYYK 248 +F ++ Sbjct: 256 KVFTEFQ 262 >ref|NP_230554.1| ABC transporter, ATP-binding protein [Vibrio cholerae O1 biovar eltor str. N16961] sp|Q9KTJ5|METN_VIBCH Probable D-methionine transport ATP-binding protein metN pir||C82266 ABC transporter, ATP-binding protein VC0907 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gb|AAF94069.1| ABC transporter, ATP-binding protein [Vibrio cholerae O1 biovar eltor str. N16961] Length = 344 Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 137/241 (56%), Positives = 176/241 (73%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI +K ++K + ++ AL+DINL I +G IFG+IG+SGAGKSTLIRC+N LE+P SG Sbjct: 1 MIEIKSVNKVFYQGDKQIHALKDINLFIPQGTIFGVIGSSGAGKSTLIRCVNMLEKPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 + + GV +T IGMIFQ FNLL ++TV+ NVA PL +AG S+Q+ + + Sbjct: 61 QVIVDGVDLTTLSNPQLCAARRNIGMIFQHFNLLSSRTVFENVALPLELAGQSQQHIETK 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L LVGLS K YP+ LSGGQKQRV IARALA++P VLL DEATSALDP TT SIL Sbjct: 121 VTELLALVGLSEKRESYPANLSGGQKQRVAIARALASDPKVLLCDEATSALDPATTQSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL++INR+LNLTI+LITHEMDV++ IC A+I GG +VE G V +F P++E A QF Sbjct: 181 ELLKEINRQLNLTILLITHEMDVVKSICHEVAIIGGGELVEKGTVGDIFAHPKTELAHQF 240 Query: 241 V 241 + Sbjct: 241 I 241 >ref|NP_981418.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS44026.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 341 Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 138/260 (53%), Positives = 180/260 (69%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI ++++ K Y + G V+A+++ NL+I KGEIFG+IG SGAGKS+LIR N+LE+P SG Sbjct: 1 MILLENVKKIYKAKSGDVTAVDNANLKIEKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 I I I+ IGMIFQ FNLL ++TV N+ FPL +AG K ++R Sbjct: 61 QITIANRVISAITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKAKRRKR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E++ LVGL G+ + YPSQLSGGQKQRVGIARALA P VLL DEATSALDP+TT IL Sbjct: 121 VDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 +LL DIN++L LTIVLITHEM V+R IC AV+E G+IVE GPV +F P+ + K+F Sbjct: 181 DLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMEKGKIVETGPVLDVFRNPQQDITKRF 240 Query: 241 VNIFNYYKDGNKAEKAVITR 260 V +D N+ +++I + Sbjct: 241 VQQLTDSEDTNETIESLIEK 260 >ref|NP_759298.1| ABC-type metal ion transport system, ATPase component [Vibrio vulnificus CMCP6] gb|AAO08825.1| ABC-type metal ion transport system, ATPase component [Vibrio vulnificus CMCP6] Length = 344 Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 135/241 (56%), Positives = 173/241 (71%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI + ++K + + AL+DINL IA+G IFG+IG+SGAGKSTLIRC+N LE P SG Sbjct: 1 MIEINQVNKVFYQGSKEIHALKDINLHIAEGTIFGVIGSSGAGKSTLIRCVNMLEAPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 SI + GV +T IGMIFQ FNLL ++TV+ NVA PL +AG K+ + + Sbjct: 61 SIVVDGVDLTKLSKKQLSETRRNIGMIFQHFNLLSSRTVFDNVALPLELAGKDKEQIQSK 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L+LVGL+ K YP+ LSGGQKQRV IARALA++P VLL DEATSALDP TT SIL Sbjct: 121 VTELLKLVGLADKHESYPANLSGGQKQRVAIARALASDPKVLLCDEATSALDPATTQSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL++INRKL +TI+LITHEMDV++ IC A+I GG +VE G V ++F P++E A F Sbjct: 181 ELLKEINRKLKITILLITHEMDVVKSICHEVAIIGGGELVEKGTVGEIFAHPKTELAHDF 240 Query: 241 V 241 + Sbjct: 241 I 241 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 343,344,347 Number of extensions: 12809614 Number of successful extensions: 107508 Number of sequences better than 1.0e-05: 21057 Number of HSP's gapped: 85048 Number of HSP's successfully gapped: 22246 Length of query: 260 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 137 Effective length of database: 423,280,401 Effective search space: 57989414937 Effective search space used: 57989414937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)