BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0019.p
         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO66290.1| glutamate synthase small subunit protein [Breviba...   194   5e-49
gb|EAD98362.1| unknown [environmental sequence]                       152   2e-36
gb|EAJ93952.1| unknown [environmental sequence]                       149   1e-35
ref|ZP_00033318.1| COG0493: NADPH-dependent glutamate synthase b...   144   6e-34
gb|EAI53426.1| unknown [environmental sequence]                       143   1e-33

>gb|AAO66290.1| glutamate synthase small subunit protein [Brevibacillus agri]
          Length = 448

 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
            ++NF+E    L  K AI+E+NRCLYCYDAPCIKACPTSI+IPSFI++IATGNL GSA+T
Sbjct: 7   LQKNFSEVVSALKPKEAIDEANRCLYCYDAPCIKACPTSIDIPSFIRKIATGNLLGSART 66

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM+SNPVGASCARVCPTEELCEGACVLN  S P+ IGLLQR+ATDWAI +   LF+ G P
Sbjct: 67  IMESNPVGASCARVCPTEELCEGACVLNHASKPIMIGLLQRHATDWAIRNNAALFQKGDP 126

Query: 122 NGR 124
           NG+
Sbjct: 127 NGK 129


>gb|EAD98362.1| unknown [environmental sequence]
          Length = 205

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 90/121 (74%), Gaps = 1/121 (0%)

Query: 5   NFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQTIMD 64
           NF++  P L+   A  ES+RC +CYDAPCI+ACPT+I+IP+FI++I+TGNLKGSA+ I+ 
Sbjct: 19  NFSDHHPPLSSANAKVESDRCYFCYDAPCIEACPTAIDIPNFIRKISTGNLKGSAKDILT 78

Query: 65  SNPVGASCARVCPTEELCEGACVLN-DDSAPVQIGLLQRYATDWAISSGTRLFKPGLPNG 123
            N +G  CARVCPTE LCEG CV N  D  PV+IG LQRYATDW   SG  LF+ G P G
Sbjct: 79  QNIMGGMCARVCPTEILCEGVCVRNTQDENPVRIGDLQRYATDWFFESGEILFERGEPTG 138

Query: 124 R 124
           +
Sbjct: 139 K 139


>gb|EAJ93952.1| unknown [environmental sequence]
          Length = 184

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 1/121 (0%)

Query: 5   NFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQTIMD 64
           NF++  P L+   A  ES+RC +CYDAPCI+ACPT+I+IP+FI++I+TGNLKGSA+ I+ 
Sbjct: 19  NFSDHHPPLSPAYAKVESDRCYFCYDAPCIEACPTAIDIPNFIRKISTGNLKGSAKDILT 78

Query: 65  SNPVGASCARVCPTEELCEGACVLN-DDSAPVQIGLLQRYATDWAISSGTRLFKPGLPNG 123
            N +G  CARVCPTE LCEG CV N  +  PV+IG LQRYATDW   SG  LF+ G P G
Sbjct: 79  QNIMGGMCARVCPTEILCEGVCVRNTQEEKPVRIGDLQRYATDWFFESGETLFERGEPTG 138

Query: 124 R 124
           +
Sbjct: 139 K 139


>ref|ZP_00033318.1| COG0493: NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Burkholderia fungorum]
          Length = 449

 Score =  144 bits (363), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 1/120 (0%)

Query: 6   FAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQTIMDS 65
           F++  P L    A   ++RC YCYDAPC+ ACPT I+IPSFI++I+ GNLKG+A  I+ +
Sbjct: 23  FSDIAPLLDASAAAAAASRCHYCYDAPCVNACPTQIDIPSFIRKISNGNLKGAAVDILSA 82

Query: 66  NPVGASCARVCPTEELCEGACVLN-DDSAPVQIGLLQRYATDWAISSGTRLFKPGLPNGR 124
           NP+G  CARVCPTE LCEGACV N  D+ PV IG LQR+ATDWA++ G  LFK     GR
Sbjct: 83  NPMGGMCARVCPTEILCEGACVRNHQDAKPVAIGALQRHATDWAMARGEVLFKRAAETGR 142


>gb|EAI53426.1| unknown [environmental sequence]
          Length = 391

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
             +NF +  P L    A+ E+ RC YC+DAPC+ ACPT+I+IPSFI++I+TGN++GSA+ 
Sbjct: 17  LEQNFEDIHPPLDSGNAMLEAQRCYYCFDAPCVNACPTAIDIPSFIRKISTGNIRGSAKD 76

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLN-DDSAPVQIGLLQRYATDWAISSGTRLFKPGL 120
           I+  N +G  CARVCPTE LCEG CV N  +  PV+IG LQRY+TDW +  G  LF+   
Sbjct: 77  ILSQNIMGGMCARVCPTEVLCEGVCVRNTQEGQPVRIGELQRYSTDWLMEKGETLFQRAP 136

Query: 121 PNGR 124
            +G+
Sbjct: 137 SSGK 140


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 200,477,341
Number of extensions: 7358079
Number of successful extensions: 13540
Number of sequences better than 1.0e-05: 409
Number of HSP's gapped: 13548
Number of HSP's successfully gapped: 409
Length of query: 143
Length of database: 757,237,578
Length adjustment: 104
Effective length of query: 39
Effective length of database: 474,867,282
Effective search space: 18519823998
Effective search space used: 18519823998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)