BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0014.p (123 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ93967.1| unknown [environmental sequence] 99 3e-20 gb|EAH55961.1| unknown [environmental sequence] 98 5e-20 ref|NP_769476.1| ABC transporter permease protein [Bradyrhizobiu... 96 2e-19 ref|ZP_00013469.1| COG0600: ABC-type nitrate/sulfonate/bicarbona... 93 2e-18 gb|EAD28788.1| unknown [environmental sequence] 89 3e-17 >gb|EAJ93967.1| unknown [environmental sequence] Length = 252 Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M +N G+ + D + LDLMHSYAA + +RI N++P++F ALKIN+T ++IGAIV Sbjct: 131 MLVNTLAGLKSTDRIELDLMHSYAANYWQLLLKVRIPNAMPFIFNALKINSTLALIGAIV 190 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 EFF + G+G+ +S I + + W+ I +AA++G +FY ++ +E+ F WH S R Sbjct: 191 AEFFGTPIVGMGFRISTEIGRMNVDVVWASIAVAALSGSLFYALLAFIERQFTGWHPSIR 250 >gb|EAH55961.1| unknown [environmental sequence] Length = 143 Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M +N G+ + D + LDLMHS+AA + +R+ N+LP++F ALKIN+T ++IGAIV Sbjct: 22 MLVNTLAGLKSTDRIELDLMHSFAANYWQILFKVRLPNALPFIFNALKINSTLALIGAIV 81 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 EFF + G+G+ +S I + + W+ I +AA++G +FY ++ +E+ F WH S R Sbjct: 82 AEFFGTPIVGMGFRISTEIGRMNVDVVWASIAVAALSGSLFYALLAFIERQFTGWHPSIR 141 >ref|NP_769476.1| ABC transporter permease protein [Bradyrhizobium japonicum] dbj|BAC48101.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 79/119 (66%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 + ++A +G +VDP +DL + + VFR + + ++LP +F+ LK++ T +++GA+V Sbjct: 144 VVVSAVQGFKSVDPDMVDLARAMQGSRFQVFRAVNLPHALPAIFSGLKVSVTLAVVGAVV 203 Query: 64 GEFFFSSRGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 GEF S+ G+GY++ SI +P ++ +V+ A+ GV+ + +V+R+EK+ I WH S+R Sbjct: 204 GEFVGSNSGIGYVMQRSIGTFDLPTMFAALVILALLGVVLFWIVDRIEKLVIPWHVSQR 262 >ref|ZP_00013469.1| COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Rhodospirillum rubrum] Length = 569 Score = 93.2 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M +N G+ A +P LDLM SYAAG LR+ +LP++F LKIN T ++IGAIV Sbjct: 448 MLVNTLAGLRAAEPEQLDLMRSYAAGWGRTLVLLRLPAALPFLFNGLKINATLALIGAIV 507 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSS 120 EFF + G+G+ +S + + W+ I +AA+AG FY ++ LEK WH S Sbjct: 508 AEFFGTPIVGMGFRISTEVSRMNTDIVWASIAVAAVAGSGFYGLLALLEKRLTHWHPS 565 >gb|EAD28788.1| unknown [environmental sequence] Length = 166 Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M IN +G+ D + DLMH+Y A LR+ ++P++F LKI +T ++IGAIV Sbjct: 43 MLINTIQGLQMSDKIHRDLMHTYNATSFQTLIKLRLAAAMPFIFNGLKICSTLALIGAIV 102 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 EFF S +G+G+ +S + + + W+ I +AAI G +FY + LEKV WH S+R Sbjct: 103 AEFFGSPIKGIGFRISTEVGRFALDMVWAEITIAAITGSLFYGGIVLLEKVVTFWHPSQR 162 Query: 123 A 123 Sbjct: 163 G 163 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 157,098,987 Number of extensions: 5423401 Number of successful extensions: 20938 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 20933 Number of HSP's successfully gapped: 165 Length of query: 123 Length of database: 757,237,578 Length adjustment: 87 Effective length of query: 36 Effective length of database: 521,023,965 Effective search space: 18756862740 Effective search space used: 18756862740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 120 (50.8 bits)