BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0013.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_357319.1| AGR_L_3063p [Agrobacterium tumefaciens] >gi|179... 58 8e-08 ref|NP_769954.1| ABC transporter permease protein [Bradyrhizobiu... 57 2e-07 ref|NP_228295.1| ABC transporter, permease protein, cysTW family... 56 3e-07 gb|EAH45837.1| unknown [environmental sequence] 55 1e-06 gb|EAG32585.1| unknown [environmental sequence] 52 9e-06 >ref|NP_357319.1| AGR_L_3063p [Agrobacterium tumefaciens] ref|NP_533786.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||F98322 nitrate transport protein nrtB homolog HI0355 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AH2960 ABC transporter, membrane spanning protein Atu3286 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90104.1| AGR_L_3063p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44102.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 261 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 47/95 (49%) Query: 80 KYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRWGGGS 139 +Y LP P+ +A A L TL E +G+ G G L+A A PR+G Sbjct: 28 RYILPSPADVAAAFWRQSGFLFGQAMVTLGEMALGLAAGVTAGILVAFTIAATPRFGRLV 87 Query: 140 LTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVA 174 +V L A P+ LAPI+ LWFG G+ S+ + A Sbjct: 88 WPMVLVLQAFPVFVLAPILVLWFGFGMASKVVMTA 122 >ref|NP_769954.1| ABC transporter permease protein [Bradyrhizobium japonicum] dbj|BAC48579.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 53/99 (53%) Query: 76 LELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRW 135 L L Y LP + I + + L+ GYTL EA+VG +G G +A+A P Sbjct: 33 LHLPAYVLPAVTDILAGLWSKRATLIDAAGYTLLEALVGYGLGCLIGIGLAVAIALVPAL 92 Query: 136 GGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVA 174 L L A+N+VP+V +P++ LWFG G+ S+ +VA Sbjct: 93 RSAILPLATAINSVPVVGYSPLILLWFGIGVSSKIVMVA 131 >ref|NP_228295.1| ABC transporter, permease protein, cysTW family [Thermotoga maritima] pir||D72369 ABC transporter, permease protein, cysTW family - Thermotoga maritima (strain MSB8) gb|AAD35570.1| ABC transporter, permease protein, cysTW family [Thermotoga maritima] Length = 250 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%) Query: 80 KYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRWGGGS 139 +Y LP PS+I + +L+ ++ YT+ EA G++IG G +A+ + Sbjct: 28 QYLLPKPSSIVLEGLSQWKILMDHSLYTILEAFSGLVIGLVLGVGLAVLMDLFQTVKEVM 87 Query: 140 LTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVAGGT 177 ++ A+PIVA+AP++ +WFG G+G++ IVA T Sbjct: 88 YPILIISQAIPIVAVAPLVIIWFGLGVGTKIGIVAFVT 125 >gb|EAH45837.1| unknown [environmental sequence] Length = 151 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%) Query: 70 QVFHKLLELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAA 129 V K+ ++ + LP PS I +AM DN +L S+T TL E ++G +I G L++ A Sbjct: 22 DVLVKINDVPSWLLPSPSEIFKAMLDNARILTSHTITTLIEVILGFVIALFVGLLLSSAI 81 Query: 130 TAWPRWGGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVA 174 T + A +P++ +AP++ +W G G+ + +VA Sbjct: 82 TLSSTIEKSFYPFIIASQTIPVIVIAPMLLVWVGYGLMPKIIVVA 126 >gb|EAG32585.1| unknown [environmental sequence] Length = 247 Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 51/96 (53%) Query: 77 ELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRWG 136 EL +Y LP P A+ + ++LL TL E + G +G+ G + A+ A+PR G Sbjct: 26 ELPRYILPPPLAVLAKFQTAHAMLLEEALVTLREILAGFAMGAVFGAMAAIFIAAFPRIG 85 Query: 137 GGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAI 172 ++ L + P+ +AP++ LWFG GI S+ + Sbjct: 86 RFIWPVLVVLQSFPVFVIAPMLVLWFGFGIASKVVM 121 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 237,715,078 Number of extensions: 8302505 Number of successful extensions: 26357 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 26435 Number of HSP's successfully gapped: 44 Length of query: 181 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 63 Effective length of database: 436,855,896 Effective search space: 27521921448 Effective search space used: 27521921448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)