BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0011.p
         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_103169.1| ATP-binding protein of ABC transporter [Mesorhi...   118   5e-26
ref|ZP_00090452.1| COG1116: ABC-type nitrate/sulfonate/bicarbona...   117   1e-25
ref|ZP_00006808.1| COG1116: ABC-type nitrate/sulfonate/bicarbona...   116   2e-25
gb|EAG46197.1| unknown [environmental sequence]                       115   3e-25
ref|NP_769478.1| ABC transporter ATP-binding protein [Bradyrhizo...   115   3e-25

>ref|NP_103169.1| ATP-binding protein of ABC transporter [Mesorhizobium loti
           MAFF303099]
 dbj|BAB48955.1| ATP-binding protein of ABC transporter [Mesorhizobium loti]
          Length = 263

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 72/97 (74%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + ++LLMDEPF ALDE  R+ LNE+LL +W++   TI FVTHSIPE+++LS R+ V+SP 
Sbjct: 159 DADLLLMDEPFGALDEIVRDHLNEQLLQLWARTNKTICFVTHSIPEAVYLSTRIVVMSPR 218

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR+S I++  LP+ R  ++R +PEF  + AR+RD  
Sbjct: 219 PGRVSDIIESTLPKERPLDIRETPEFLAIAARVRDGL 255


>ref|ZP_00090452.1| COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system,
           ATPase component [Azotobacter vinelandii]
          Length = 408

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           EPE+LLMDEPF+ALD  TRE L  ELL +W + + TIVF+THS+ E+IFLSDR+ V++  
Sbjct: 277 EPEVLLMDEPFAALDAQTREILQGELLRIWDRHKKTIVFITHSLDEAIFLSDRIAVMTHR 336

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVAR 93
           PGR+  I+++PLPRPR AE+RNS +F  L  R
Sbjct: 337 PGRIKEIIEVPLPRPRLAELRNSEDFVHLRQR 368


>ref|ZP_00006808.1| COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system,
           ATPase component [Rhodobacter sphaeroides]
          Length = 179

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 73/98 (74%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + +ILLMDEPF ALDE  R+RLNE LL +W++   TI FVTHSIPE+++LS R+ V+SP 
Sbjct: 75  DADILLMDEPFGALDEIVRDRLNEALLKLWARTGKTIGFVTHSIPEAVYLSTRIVVMSPR 134

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSFE 99
           PGR++ +++ PLPR R  ++R+S +F E+  R+R+   
Sbjct: 135 PGRITDVIESPLPRERPLDIRDSRDFIEIAHRVREGLR 172


>gb|EAG46197.1| unknown [environmental sequence]
          Length = 189

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 73/97 (75%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + +ILLMDEPF ALDE  R+ LNE+LL +W++ + TI FVTHSIPE+++LS ++ V+SP 
Sbjct: 86  DADILLMDEPFGALDEIVRDHLNEQLLKLWARTEKTIAFVTHSIPEAVYLSTKIVVMSPR 145

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR++ +++  LPR R  E+R+SPEF  +  R+R+  
Sbjct: 146 PGRVTDVIESTLPRERPLEIRDSPEFIAIAHRVREGL 182


>ref|NP_769478.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum]
 dbj|BAC48103.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA
           110]
          Length = 282

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 73/97 (75%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           +P+I+LMDEPF ALD  TRER+N EL+ +  + + T++ +THSIPE++FL+DRV V++  
Sbjct: 179 DPKIMLMDEPFGALDALTRERMNVELMRIQRETKKTVLLITHSIPEAVFLADRVLVMTER 238

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PG ++AI D+PLPRPR+ ++   P F ELV RIR  F
Sbjct: 239 PGAVAAIYDVPLPRPRSLDVMADPVFTELVQRIRKHF 275


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 147,812,970
Number of extensions: 5311933
Number of successful extensions: 33245
Number of sequences better than 1.0e-05: 1571
Number of HSP's gapped: 33892
Number of HSP's successfully gapped: 1573
Length of query: 101
Length of database: 757,237,578
Length adjustment: 68
Effective length of query: 33
Effective length of database: 572,610,846
Effective search space: 18896157918
Effective search space used: 18896157918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)