BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0004.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241030.1| ABC transporter (ATP-binding protein) [Bacillus... 188 1e-46 ref|NP_608163.1| ABC transporter (ATP-binding protein) [Streptoc... 182 8e-45 ref|NP_665650.1| putative ABC transporter ATP-binding protein [S... 181 1e-44 ref|NP_270102.1| ABC transporter (ATP-binding protein) [Streptoc... 181 1e-44 ref|NP_830039.1| Cobalt transport ATP-binding protein cbiO [Baci... 177 2e-43 >ref|NP_241030.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||T44412 ABC transporter (ATP-binding protein) BH0164 [imported] - Bacillus halodurans (strain C-125) dbj|BAA75300.1| ybxA homologue (identity of 50% to B. subtilis ) [Bacillus halodurans] dbj|BAB03883.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 278 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/265 (39%), Positives = 165/265 (62%), Gaps = 4/265 (1%) Query: 8 TLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGSLSAAGL 67 ++S++ PVL+ I IH+ GEWVA+ G NG GKS+L + NGL +PT G ++ G+ Sbjct: 9 SVSYQYDANAAPVLKEIDIHVPLGEWVAVIGPNGSGKSTLAKLLNGLLLPTSGRVTFNGM 68 Query: 68 DLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIEDVLGQV 127 +++ + LVFQNPE Q V +T +D+AFG+ENRG R M+ +IE+V QV Sbjct: 69 STMDEGTHWEIRQQVGLVFQNPEHQFVATTVRDDLAFGMENRGFPREKMIQRIEEVSIQV 128 Query: 128 GLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILELARQLWA 187 G+ H + LSGG++QR+A+A LA++ +I+FDE TSMLDP GR+D+LE +QL Sbjct: 129 GIDHLLDEEPHRLSGGQKQRVAIAGILAVEPSVIVFDEATSMLDPQGRKDVLETMKQLHE 188 Query: 188 QGTTVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDA--LDWPAAPVIRI 245 G T++ +T + E +++ RV ++ +G+++ DG P +F+ +A +D P A +++ Sbjct: 189 NGMTIISITHDVNEASQAGRVLLLEKGEVMLDGSPAVVFHEQDKLEAAGIDRPFAYQLQL 248 Query: 246 GQLLQAKGWPLDSLPLTERELEAAL 270 LQ++G L+ L + EL AL Sbjct: 249 A--LQSRGIQLEGALLKKEELVEAL 271 >ref|NP_608163.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes MGAS8232] ref|NP_803104.1| putative ABC transporter (ATP-binding protein) [Streptococcus pyogenes SSI-1] gb|AAC61484.1| ABC transporter ATP-binding protein [Streptococcus pyogenes] gb|AAL98662.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes MGAS8232] dbj|BAC64937.1| putative ABC transporter (ATP-binding protein) [Streptococcus pyogenes SSI-1] Length = 296 Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 9/274 (3%) Query: 1 MIRAEHLTLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGG 60 +I + +T ++ Q + P L G+S H+++GEW+++ G NG GKS+ IR +GL P G Sbjct: 21 IIELKKVTFNYHKDQEK-PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 79 Query: 61 SLSAAGLDLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKI 120 S+ G DL + N ++ I +VFQNP+ Q VG+T +DVAFGLEN+G++ + ++ Sbjct: 80 SIIVDG-DLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERV 138 Query: 121 EDVLGQVGLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILE 180 L VG+ + + + LSGG++QR+A+A +A+ ++II DE TSMLDP GR ++++ Sbjct: 139 NHALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIK 198 Query: 181 LARQLWAQGT-TVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASG---LPDALD 236 + + TV+ +T ++E+A S RV VM G++ P LF A G L LD Sbjct: 199 TIKNIRDDYQLTVISITHDLDEVALSDRVLVMKDGQVESTSTPEQLF-ARGDELLQLGLD 257 Query: 237 WPAAPVIRIGQLLQAKGWPLDSLPLTERELEAAL 270 P + Q+LQ +G+P+D LTE+ELE L Sbjct: 258 IPFTT--SVVQMLQEEGYPIDYGYLTEKELENQL 289 >ref|NP_665650.1| putative ABC transporter ATP-binding protein [Streptococcus pyogenes MGAS315] gb|AAM80453.1| putative ABC transporter ATP-binding protein [Streptococcus pyogenes MGAS315] Length = 279 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 9/274 (3%) Query: 1 MIRAEHLTLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGG 60 +I + +T ++ Q + P L G+S H+++GEW+++ G NG GKS+ IR +GL P G Sbjct: 4 IIELKKVTFNYHKDQEK-PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62 Query: 61 SLSAAGLDLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKI 120 S+ G DL + N ++ I +VFQNP+ Q VG+T +DVAFGLEN+G++ + ++ Sbjct: 63 SIIVDG-DLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERV 121 Query: 121 EDVLGQVGLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILE 180 L VG+ + + + LSGG++QR+A+A +A+ ++II DE TSMLDP GR ++++ Sbjct: 122 NHALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIK 181 Query: 181 LARQLWAQGT-TVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASG---LPDALD 236 + + TV+ +T ++E+A S RV VM G++ P LF A G L LD Sbjct: 182 TIKNIRDDYQLTVISITHDLDEVALSDRVLVMKDGQVESTSTPEQLF-ARGDELLQLGLD 240 Query: 237 WPAAPVIRIGQLLQAKGWPLDSLPLTERELEAAL 270 P + Q+LQ +G+P+D LTE+ELE L Sbjct: 241 IPFTT--SVVQMLQEEGYPIDYGYLTEKELENQL 272 >ref|NP_270102.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes] gb|AAK34823.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes M1 GAS] Length = 296 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 9/274 (3%) Query: 1 MIRAEHLTLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGG 60 +I + +T ++ Q + P L G+S H+++GEW+++ G NG GKS+ IR +GL P G Sbjct: 21 IIELKKVTFNYHKDQEK-PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 79 Query: 61 SLSAAGLDLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKI 120 S+ G DL + N ++ I +VFQNP+ Q VG+T +DVAFGLEN+G++ + ++ Sbjct: 80 SIIVDG-DLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERV 138 Query: 121 EDVLGQVGLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILE 180 L VG+ + + + LSGG++QR+A+A +A+ ++II DE TSMLDP GR ++++ Sbjct: 139 NHALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIK 198 Query: 181 LARQLWAQGT-TVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASG---LPDALD 236 + + TV+ +T ++E+A S RV VM G++ P LF A G L LD Sbjct: 199 TIKNIRDDYQLTVISITHDLDEVALSDRVLVMKDGQVESTSTPEQLF-ARGDELLQLGLD 257 Query: 237 WPAAPVIRIGQLLQAKGWPLDSLPLTERELEAAL 270 P + Q+LQ +G+P+D LTE+ELE L Sbjct: 258 IPFTT--SVVQMLQEEGYPVDYGYLTEKELENQL 289 >ref|NP_830039.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] gb|AAP07240.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] Length = 280 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 21 LQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGSLSAAGLDLRSPANRAAVKR 80 L+ +S + GEWV++ G NG GKS+L + NGL +P G+++ + S V++ Sbjct: 23 LKDVSFSLYEGEWVSIIGQNGSGKSTLAKLLNGLFLPEAGTITVNDTMVLSEETVWDVRK 82 Query: 81 HIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIEDVLGQVGLAHKARADVSTL 140 I +VFQNP+ Q VG+T +DV FGLEN G+ R M+ ++E L V + + +L Sbjct: 83 QIGMVFQNPDNQFVGTTVQDDVVFGLENIGMPREQMIERLEQALQLVRMEDFLNDEPHSL 142 Query: 141 SGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILELARQLWAQ-GTTVLWVTQRM 199 SGG++QR+A+A LAL ++I DE TSMLDP GRR+++E RQL Q G TVL +T + Sbjct: 143 SGGQKQRVAIAGVLALQPSILILDEATSMLDPQGRREVVETVRQLVTQKGITVLSITHDL 202 Query: 200 EELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDALDWPAAPVIRIGQLLQAKGWPLDSL 259 EE A+S RV ++ +G++L +G P +F +S + + ++I +LL+ L + Sbjct: 203 EEAAQSDRVIILNKGEILEEGTPEKIFKSSHMLQEIGLDVPFSVKIAELLKRNEILLQNT 262 Query: 260 PLTEREL 266 LT L Sbjct: 263 HLTMESL 269 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 387,963,709 Number of extensions: 15644728 Number of successful extensions: 96895 Number of sequences better than 1.0e-05: 16392 Number of HSP's gapped: 82918 Number of HSP's successfully gapped: 17449 Length of query: 270 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 146 Effective length of database: 420,565,302 Effective search space: 61402534092 Effective search space used: 61402534092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)