BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0003.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_563289.1| probable ABC transporter [Clostridium perfringe... 131 1e-29 ref|NP_349701.1| ABC-type transporter, ATPase component (cobalt ... 127 2e-28 ref|ZP_00036057.1| COG1122: ABC-type cobalt transport system, AT... 125 7e-28 ref|NP_228037.1| ABC transporter, ATP-binding protein [Thermotog... 121 7e-27 ref|ZP_00070439.1| COG1122: ABC-type cobalt transport system, AT... 121 8e-27 >ref|NP_563289.1| probable ABC transporter [Clostridium perfringens] dbj|BAB82079.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 285 Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAGKVSM---- 73 L +I+ +I +G L G TGSGKST ++ L+GL P SG I DG KV + Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDIR 82 Query: 74 -----VFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 VFQ PE QLF ++ K++EYG G+ + + ++ ++ VGL Y+ + +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA IA P +L+LDEPTAGLDP+ Sbjct: 143 FDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPK 178 >ref|NP_349701.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] pir||F97281 ABC-type transporter, ATPase component (cobalt transporters subfamily) CAC3101 [imported] - Clostridium acetobutylicum gb|AAK81041.1| ABC-type transporter, ATPase component (cobalt transporters subfamily) [Clostridium acetobutylicum] Length = 286 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGG---------QPPA 68 L ++++ I +G V G TGSGKSTL++ ++GL +P SG+I D Sbjct: 23 LDNVNITIEDGEFAVFIGHTGSGKSTLIQQINGLLKPTSGSIFIDDVDITDKSVKLNDIR 82 Query: 69 GKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 KV +VFQ PE QLF ++ K++ +G G+ + ++ A+ VGL Y++F +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPRNMGLSEEEVSTRVKKAMKMVGLEYNDFKDKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA +A P +L+LDEPTAGLDP+ Sbjct: 143 FELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPK 178 >ref|ZP_00036057.1| COG1122: ABC-type cobalt transport system, ATPase component [Enterococcus faecium] Length = 289 Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 102/178 (57%), Gaps = 17/178 (9%) Query: 3 IQADHVSFRYD-----KLPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASG 57 I+ + V F Y + L DI++ I+E + T L G TGSGKSTLL+ L+ L +P SG Sbjct: 3 IRFEQVDFTYQPNTPFEQRALFDINMTIKENSYTALVGHTGSGKSTLLQHLNALVKPTSG 62 Query: 58 TIAF-----------DGGQPPAGKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRL 106 T+ +P KV +VFQ PE QLF +V K++ +G GV + L Sbjct: 63 TVHIGERDIQPDTDNKNLKPIRKKVGIVFQFPEAQLFEETVAKDIAFGPKNFGVSEEEAL 122 Query: 107 ELIRSALARVGLPYDEFGRRSPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 L + L +VGL + + RSPF LSGG+ RR+ IA +A P +LVLDEPTAGLDPQ Sbjct: 123 VLAKETLEQVGLD-ESYLERSPFELSGGQMRRVAIAGVLAMRPEVLVLDEPTAGLDPQ 179 >ref|NP_228037.1| ABC transporter, ATP-binding protein [Thermotoga maritima] pir||A72401 ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35314.1| ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 266 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 5/151 (3%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDG----GQPPAGKVSM 73 L ++SL I EG ++ G TGSGKSTLL++++GL +P SG + +DG G + + Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82 Query: 74 VFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSPFLLSG 133 FQ PE Q FA V E+ + + + P + L++ A+ VGL +D F R PF LSG Sbjct: 83 AFQYPEDQFFAERVFDEVAFAV-KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSG 141 Query: 134 GEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 GEKRR+ IA+ I P +L+LDEP GLD + Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 >ref|ZP_00070439.1| COG1122: ABC-type cobalt transport system, ATPase component [Oenococcus oeni MCW] Length = 292 Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 12/160 (7%) Query: 14 KLPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAG---- 69 + LTD++L I G+ + G TGSGKSTL+R L+GL +P+SG + + Sbjct: 19 QFKALTDVNLKIESGSFMAIIGKTGSGKSTLIRHLNGLLKPSSGEVKIGNLTITSSIKES 78 Query: 70 -------KVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDE 122 KV M+FQ PE QLFA +V ++E+G G + ++ R +L +VGL DE Sbjct: 79 QLSDLRRKVGMLFQFPEQQLFADTVEHDIEFGPINFGTTKEKAKKIARESLKKVGLN-DE 137 Query: 123 FGRRSPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLD 162 F RSP LSGG+ RR+ +A +A P +LVLDEPTAGLD Sbjct: 138 FLNRSPLELSGGQMRRVALAGVLAVKPDILVLDEPTAGLD 177 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 274,018,637 Number of extensions: 11139861 Number of successful extensions: 89982 Number of sequences better than 1.0e-05: 14270 Number of HSP's gapped: 76165 Number of HSP's successfully gapped: 14972 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)