BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0022.p (110 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099497.1| COG3682: Predicted transcriptional regulator ... 81 9e-15 ref|ZP_00100282.1| COG3682: Predicted transcriptional regulator ... 70 2e-11 ref|NP_463783.1| similar to repressor (penicilinase repressor) [... 69 3e-11 ref|NP_643670.1| transcriptional regulator blaI family [Xanthomo... 63 2e-09 sp|P06555|BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY PROTEIN... 61 8e-09 >ref|ZP_00099497.1| COG3682: Predicted transcriptional regulator [Desulfitobacterium hafniense] Length = 154 Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 1 MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60 M+ IW PP+T+ ++ + ++WK QT + L RLVD+G L ++G+ Y P + Sbjct: 44 MKVIWANEPPITANMIMEQLGNE-KEWKVQTAISMLLRLVDRGFLRTEKNGKERTYYPLV 102 Query: 61 SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQW 106 S E+Y E + + + S +L+ +Y+G ++D+DIDEL QW Sbjct: 103 SKEDYLKFETSNFMKQYHDNSFLDLVHTLYEGKAVTDEDIDELLQW 148 >ref|ZP_00100282.1| COG3682: Predicted transcriptional regulator [Desulfitobacterium hafniense] Length = 122 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%) Query: 1 MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60 M IW VTS +++ + W+ T+ FLSRL D+G LTV + R N Y + Sbjct: 15 MMIIWDADEGVTSDYIMDRL---DKTWQKTTVLNFLSRLGDRGFLTVHKQSRFNVYEALV 71 Query: 61 SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSE 109 E+Y E++ L ++ S+ +L++++YDG +S +D+ ELK++ E Sbjct: 72 KKEDYLQKESKTFLQRMHHNSLTSLVASLYDGAGISKEDLQELKKFIEE 120 >ref|NP_463783.1| similar to repressor (penicilinase repressor) [Listeria monocytogenes EGD-e] pir||AE1106 repressor (penicilinase repressor) homolog lmo0252 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00779.1| lmo0252 [Listeria monocytogenes] Length = 128 Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 62/107 (57%) Query: 1 MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60 M+ IW V ++ +K WK T+ TFL+RLV+K +L+V + GR N+Y + Sbjct: 14 MKIIWDFGRAVQYADVAGKLEEKNYSWKKNTVLTFLTRLVEKNLLSVKKVGRKNEYYALV 73 Query: 61 SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWF 107 S EY + + ++ +Y+G VK LI+ + D +S ++++L+Q++ Sbjct: 74 SENEYLERQTETFVEEIYEGDVKGLITNLVQNDLISPDELEDLQQFW 120 >ref|NP_643670.1| transcriptional regulator blaI family [Xanthomonas axonopodis pv. citri str. 306] gb|AAM38206.1| transcriptional regulator blaI family [Xanthomonas axonopodis pv. citri str. 306] Length = 121 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Query: 10 PVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSISPEEYKLIE 69 P T+ E++ A G W TI T L+RL+ KG + +HGR Y P ++ E++ + Sbjct: 19 PRTAEEVIAALAHTG--WAEPTIKTLLNRLLTKGAVAAEKHGRKYHYAPLMAREQWVQQQ 76 Query: 70 AQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSE 109 ++ +L L+ G V L++ + KLS DI ELK+ E Sbjct: 77 SEGLLQRLFGGRVAPLVAHFSERGKLSASDIAELKRLLQE 116 >sp|P06555|BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY PROTEIN BLAI) (BETA-LACTAMASE REPRESSOR PROTEIN) pir||RGBSBI regulatory protein blaI - Bacillus licheniformis gb|AAA22648.1| penicillinase repressor [Bacillus licheniformis] Length = 128 Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 2/109 (1%) Query: 1 MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60 M+ IW + + + E++ + K W +TI T L RL+ KG L + GR+ Y P+I Sbjct: 15 MKVIWKHSS-INTNEVIKELS-KTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 Query: 61 SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSE 109 +Y +++ L+ Y G++ +++ + D+LS ++I+EL Q E Sbjct: 73 DESDYIEVKSHSFLNRFYNGTLNSMVLNFLENDQLSGEEINELYQILEE 121 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 166,458,909 Number of extensions: 5944476 Number of successful extensions: 17820 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 17823 Number of HSP's successfully gapped: 21 Length of query: 110 Length of database: 757,237,578 Length adjustment: 76 Effective length of query: 34 Effective length of database: 550,890,054 Effective search space: 18730261836 Effective search space used: 18730261836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)