BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0020.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182663.1| hypothetical protein Exigu201801 [Exiguobacte... 194 8e-49 ref|NP_637057.1| general stress protein [Xanthomonas campestris ... 141 5e-33 ref|NP_642038.1| general stress protein [Xanthomonas axonopodis ... 140 7e-33 ref|NP_294870.1| general stress protein 26, putative [Deinococcu... 129 3e-29 ref|ZP_00048762.1| COG3871: Uncharacterized stress protein (gene... 113 2e-24 >ref|ZP_00182663.1| hypothetical protein Exigu201801 [Exiguobacterium sp. 255-15] Length = 161 Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 91/162 (56%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 1 MSTLDKSHQEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTS 60 MST S+QEAVETV++LI I+TAM TTIS+EGLV RPM+TQ++EFDGDLWF+T KDT Sbjct: 1 MSTNHTSNQEAVETVKKLIDKIETAMLTTISDEGLVSRPMQTQDIEFDGDLWFLTSKDTG 60 Query: 61 KFGEIIHDPRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILI 120 K+ EI+ +P VNV Y DKSYVSIRG A+ VED+ +KKE WS Y +L TTY DP V+LI Sbjct: 61 KYNEILKNPNVNVAYVDKSYVSIRGKAEFVEDVARKKELWSPRYEAYLGTTYEDPKVVLI 120 Query: 121 QVHAEAAEYWKSGNLAEMATYMFKRITHQDTEKSDLNKTIEL 162 +V+ E AEYW++GN + + K+ D + +++NK ++L Sbjct: 121 KVNTEGAEYWETGNTTKSVKQLLKKAVGND-DSNEINKKVDL 161 >ref|NP_637057.1| general stress protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM40981.1| general stress protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 166 Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 5/159 (3%) Query: 10 EAVETVRELIKGIDTAMFTTISEEG-LVFRPMKTQEVEFDGDLWFMTKKDTSKFGEIIHD 68 E+++ + ELI+G++ AMFTT+S +G LV RP+ TQEVEFDGDLWF T D+ K EI D Sbjct: 8 ESIKQLAELIRGVNVAMFTTVSADGRLVSRPLGTQEVEFDGDLWFATAADSPKVAEIAAD 67 Query: 69 PRVNVVYAD---KSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHAE 125 PRVNV YA SYVS+ GTA++++D K ++ WS F +DP++ LI V AE Sbjct: 68 PRVNVAYASASKNSYVSVAGTARVIDDRAKIEQLWSPAMKVFFPGGKDDPNLRLIHVRAE 127 Query: 126 AAEYWKS-GNLAEMATYMFKRITHQDTEKSDLNKTIELE 163 +AEYW G L A Y D N+ ++L+ Sbjct: 128 SAEYWDGPGGLLGKALYFVMTAVTDDPGSLSDNRVVDLK 166 >ref|NP_642038.1| general stress protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM36574.1| general stress protein [Xanthomonas axonopodis pv. citri str. 306] Length = 166 Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 100/164 (60%), Gaps = 7/164 (4%) Query: 6 KSHQEAVETVRELIKGIDTAMFTTISEEG-LVFRPMKTQEVEFDGDLWFMTKKDTSKFGE 64 + E+++ + ELI+G+D AMFTT+S +G LV RP+ TQEVEFDGDLWF T D+ K E Sbjct: 4 QERSESIKQLAELIRGVDIAMFTTVSADGKLVSRPLGTQEVEFDGDLWFATAADSPKVAE 63 Query: 65 IIHDPRVNVVYADKS---YVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQ 121 I DPRVNV YA S YVS+ GTA++V D K E WS F +D ++ LI Sbjct: 64 IAADPRVNVAYASASKNTYVSVAGTARVVHDRAKIDELWSPAMKVFFPAGKDDANLRLIH 123 Query: 122 VHAEAAEYW--KSGNLAEMATYMFKRITHQDTEKSDLNKTIELE 163 V AE+AEYW SG L + ++ +T SD N+ ++L+ Sbjct: 124 VRAESAEYWDGPSGLLGKALYFVMTAVTDDTGSLSD-NRVVDLK 166 >ref|NP_294870.1| general stress protein 26, putative [Deinococcus radiodurans] pir||D75431 probable general stress protein 26 - Deinococcus radiodurans (strain R1) gb|AAF10718.1| general stress protein 26, putative [Deinococcus radiodurans] Length = 193 Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 13/162 (8%) Query: 7 SHQEAVETVRELIKGIDTAMFTTISEEGLVF-RPMKTQEVEFDGDLWFMTKKDTSKFGEI 65 S EAV+TV L+KGI AM ++++ G + RPM TQE EFDGD+WF+ KD+ E+ Sbjct: 31 SRDEAVKTVAGLVKGIKFAMLVSVNDAGHIHSRPMTTQETEFDGDIWFIGAKDS----EV 86 Query: 66 IHD----PRVNVVYAD---KSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVI 118 +HD P+VNV YAD +YVS+ GTA+++ED K E WS YN + + DP+V Sbjct: 87 VHDVRSRPQVNVSYADTGSNNYVSVHGTAELIEDRAKLDELWSDMYNMYFEGGKEDPNVQ 146 Query: 119 LIQVHAEAAEYWKSGN-LAEMATYMFKRITHQDTEKSDLNKT 159 LI+++AE AEYW+SG + + + I Q + S+L K Sbjct: 147 LIKINAEGAEYWESGGKVRTLFAFAKNLIPGQRADASELGKN 188 >ref|ZP_00048762.1| COG3871: Uncharacterized stress protein (general stress protein 26) [Magnetospirillum magnetotacticum] Length = 169 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 5/155 (3%) Query: 12 VETVRELIKGIDTAMFTTISEEG-LVFRPMKTQEVEFDGDLWFMTKKDTSKFGEIIHDPR 70 V TVRELIK AM TT++ +G LV RPM Q V+FDGDLWF D+ K EI D Sbjct: 16 VATVRELIKDEKIAMLTTVATDGSLVSRPMGVQAVDFDGDLWFFAAADSHKVAEIARDSA 75 Query: 71 VNVVYADK-SYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHAEAAEY 129 N ++ S+VS+ G A +V D EK +E W+ + + + P V+L+++HA +AEY Sbjct: 76 ANAAFSGSTSWVSVSGRAAVVRDREKIRELWNTVADAWFPDGPDTPGVVLVRLHAHSAEY 135 Query: 130 WKS--GNLAEMATYMFKRITHQDTEKSDLNKTIEL 162 W S G +A + + + ++T + + N+T+EL Sbjct: 136 WDSPGGRVATLFSLVKAKVTGSRYDGGE-NETVEL 169 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 235,216,703 Number of extensions: 9317145 Number of successful extensions: 24107 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 24090 Number of HSP's successfully gapped: 15 Length of query: 163 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 47 Effective length of database: 442,286,094 Effective search space: 20787446418 Effective search space used: 20787446418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)