BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0017.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00125521.1| COG1902: NADH:flavin oxidoreductases, Old Yel... 353 4e-96 ref|ZP_00086634.1| COG1902: NADH:flavin oxidoreductases, Old Yel... 352 7e-96 ref|NP_249531.1| probable oxidoreductase [Pseudomonas aeruginosa... 343 5e-93 ref|ZP_00138433.1| COG1902: NADH:flavin oxidoreductases, Old Yel... 342 6e-93 ref|NP_791005.1| oxidoreductase, FAD/FMN-binding [Pseudomonas sy... 342 6e-93 >ref|ZP_00125521.1| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Pseudomonas syringae pv. syringae B728a] Length = 367 Score = 353 bits (905), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 179/365 (49%), Positives = 226/365 (61%), Gaps = 6/365 (1%) Query: 10 SLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM- 68 S E LF P+ + L + +R+VM+PM R+FSP VP + YYRRRA GVGLIIT G Sbjct: 2 SAEALFTPFRLGSLELSSRVVMAPMTRSFSPGHVPNSKVVEYYRRRAAAGVGLIITEGTT 61 Query: 69 IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAP 128 ++H A+ P + FGEA + GWR+V+ VH GG+IVPQL H+G +R G++P P Sbjct: 62 VNHKASNGYPNVPQFFGEAPLAGWRKVVEAVHAEGGKIVPQLWHVGAVRRPGTEPDGSVP 121 Query: 129 SIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFW 188 + GP G + M++++I V+ G DG+E+ G HG L+DQFFW Sbjct: 122 AYGPMEKVKDGQVLVHGMSKQDIDEVVAAFAQAAADARAIGMDGVEIHGAHGYLVDQFFW 181 Query: 189 EKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQ 248 E +NQR+D YGG R+RF GPDYPI R SQWK DYTA+LV TPE Sbjct: 182 EGSNQRSDEYGGSLANRSRFALELIKAVRGAVGPDYPIIFRFSQWKQQDYTARLVQTPEA 241 Query: 249 LEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDPA 308 L +FL L AGVDIFH STRRFW+PEF GS+L AGW +KLTGK TI VGSVG+D + Sbjct: 242 LGEFLQPLADAGVDIFHCSTRRFWEPEFEGSDLNLAGWTRKLTGKPTITVGSVGLDGEFL 301 Query: 309 E-----GEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 + + +E LLKRL N EFDLVAVGRALL DP WA K+REGR ++I F+ D Sbjct: 302 QFMVNTDKVAQPASLENLLKRLGNDEFDLVAVGRALLVDPDWALKVREGREQDILPFSRD 361 Query: 364 AAAKL 368 A L Sbjct: 362 ALTTL 366 >ref|ZP_00086634.1| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Pseudomonas fluorescens PfO-1] Length = 381 Score = 352 bits (903), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 177/364 (48%), Positives = 231/364 (63%), Gaps = 6/364 (1%) Query: 11 LETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-I 69 ++ LF+P+ + L +P R+VM+PM R+FSP GVP + YYRRRA GVGLIIT G + Sbjct: 17 VQALFKPFQLGALELPTRVVMAPMTRSFSPGGVPNSKVIEYYRRRAAAGVGLIITEGTTV 76 Query: 70 DHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPS 129 H A+ P + + +GEAA+ GW++V+ VH GG+IVPQL H+G +R +G++P P Sbjct: 77 GHQASNGYPNVPHFYGEAALAGWKKVVEAVHAEGGKIVPQLWHVGNVRRLGTEPDASVPG 136 Query: 130 IGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWE 189 GPS G + MT+++I VI G DG+E+ G HG LIDQFFWE Sbjct: 137 YGPSEKLKDGQVVVHRMTKQDIQDVIAAFAQAAKDAQSIGMDGVEIHGAHGYLIDQFFWE 196 Query: 190 KTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQL 249 +NQRTD YGG R+RF G +PI R SQWK DYTA+LV T E L Sbjct: 197 GSNQRTDEYGGSLANRSRFAIELIQAVRAAVGEGFPIIFRFSQWKQQDYTARLVQTAEAL 256 Query: 250 EQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDPAE 309 +FL L AGVDIFH STRRFW+PEF GS+L AGW +KLTGK TI VGSVG+D + + Sbjct: 257 GEFLKPLSDAGVDIFHCSTRRFWEPEFDGSDLNLAGWTRKLTGKPTITVGSVGLDGEFLQ 316 Query: 310 -----GEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPDA 364 + +E+LL+RL+N+EFDLVAVGRALL DP WA+K+REGR ++I F+ +A Sbjct: 317 FMVNTDKVAQPASLEKLLERLNNEEFDLVAVGRALLVDPDWAQKVREGREQDILPFSREA 376 Query: 365 AAKL 368 L Sbjct: 377 LMTL 380 >ref|NP_249531.1| probable oxidoreductase [Pseudomonas aeruginosa PA01] ref|ZP_00138434.1| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Pseudomonas aeruginosa UCBPP-PA14] pir||H83541 probable oxidoreductase PA0840 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04229.1| probable oxidoreductase [Pseudomonas aeruginosa PAO1] Length = 370 Score = 343 bits (879), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 175/365 (47%), Positives = 223/365 (61%), Gaps = 7/365 (1%) Query: 11 LETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-I 69 +E LF+P+ + L +P R+VM+PM R FSP GVP + YYRRRA GVGLI++ G + Sbjct: 5 VEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTV 64 Query: 70 DHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPS 129 H AA P + +GE A+ GW++V+ VH GGRIVPQL H+G +R +G +P P Sbjct: 65 GHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPG 124 Query: 130 IGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWE 189 GP G + M++ +I VI G DG+E+ G HG LIDQFFWE Sbjct: 125 YGPMEKAKDGKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWE 184 Query: 190 KTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQL 249 +NQR D YGG R+RF G D+PI R SQWK DY+A+LV+TPE L Sbjct: 185 GSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGL 244 Query: 250 EQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDP-- 307 +FL LV+AGVDIFH STRRFW PEF GSEL AGW ++LTGK TI VG+VG+D Sbjct: 245 REFLAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFL 304 Query: 308 ----AEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 E ++ L++RLD EFDLVAVGRALL DP WA K+REGR +I+ F+ + Sbjct: 305 QFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSRE 364 Query: 364 AAAKL 368 A A L Sbjct: 365 ALASL 369 >ref|ZP_00138433.1| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Pseudomonas aeruginosa UCBPP-PA14] Length = 397 Score = 342 bits (878), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 175/365 (47%), Positives = 223/365 (61%), Gaps = 7/365 (1%) Query: 11 LETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-I 69 +E LF+P+ + L +P R+VM+PM R FSP GVP + YYRRRA GVGLI++ G + Sbjct: 32 VEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTV 91 Query: 70 DHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPS 129 H AA P + +GE A+ GW++V+ VH GGRIVPQL H+G +R +G +P P Sbjct: 92 GHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPG 151 Query: 130 IGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWE 189 GP G + M++ +I VI G DG+E+ G HG LIDQFFWE Sbjct: 152 YGPMEKAKDGKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWE 211 Query: 190 KTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQL 249 +NQR D YGG R+RF G D+PI R SQWK DY+A+LV+TPE L Sbjct: 212 GSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGL 271 Query: 250 EQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDP-- 307 +FL LV+AGVDIFH STRRFW PEF GSEL AGW ++LTGK TI VG+VG+D Sbjct: 272 REFLAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFL 331 Query: 308 ----AEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 E ++ L++RLD EFDLVAVGRALL DP WA K+REGR +I+ F+ + Sbjct: 332 QFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSRE 391 Query: 364 AAAKL 368 A A L Sbjct: 392 ALASL 396 >ref|NP_791005.1| oxidoreductase, FAD/FMN-binding [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO54700.1| oxidoreductase, FAD/FMN-binding [Pseudomonas syringae pv. tomato str. DC3000] Length = 367 Score = 342 bits (878), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 172/365 (47%), Positives = 225/365 (61%), Gaps = 6/365 (1%) Query: 10 SLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM- 68 S LF P+ + L + +R+VM+PM R+FSP VP + YYRRRA GVGLIIT G Sbjct: 2 SAAALFTPFRLGGLELSSRVVMAPMTRSFSPGHVPNSKVIEYYRRRAAAGVGLIITEGTT 61 Query: 69 IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAP 128 ++HPA+ P + FG+A + GW++V+ VH GG+I PQL H+G +R +G++P P Sbjct: 62 VNHPASNGYPNVPQFFGDAPLAGWKKVVDAVHAEGGKIAPQLWHVGAVRRLGTEPDGSIP 121 Query: 129 SIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFW 188 + GP G + M++++I V+ G DG+E+ G HG L+DQFFW Sbjct: 122 AYGPMEKVKDGQVLVHGMSKQDIDEVVAAFAQAAADAKAIGMDGVEIHGAHGYLVDQFFW 181 Query: 189 EKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQ 248 E +NQR+D YGG R+RF GPDYPI R SQWK DY+A+LV TPE Sbjct: 182 EGSNQRSDEYGGSLANRSRFAIELIKAVRAAVGPDYPIIFRFSQWKQQDYSARLVQTPEA 241 Query: 249 LEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDPA 308 L +F+ L AGVDIFH STRRFW+PEF GSEL AGW +KLTGK TI VGSVG+D + Sbjct: 242 LGEFVQPLSDAGVDIFHCSTRRFWEPEFEGSELNLAGWTRKLTGKPTITVGSVGLDGEFL 301 Query: 309 EGEETDHQ-----GMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 + + +E LL+RL EFDLVAVGRALL DP WA K+REGR ++I F+ + Sbjct: 302 QFMVNTEKVAQPASLENLLERLGKDEFDLVAVGRALLVDPDWAVKVREGREQDILPFSRE 361 Query: 364 AAAKL 368 A L Sbjct: 362 ALTTL 366 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 552,575,884 Number of extensions: 22891829 Number of successful extensions: 51775 Number of sequences better than 1.0e-05: 736 Number of HSP's gapped: 50457 Number of HSP's successfully gapped: 737 Length of query: 369 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 242 Effective length of database: 412,420,005 Effective search space: 99805641210 Effective search space used: 99805641210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)