BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0012.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_472120.1| lin2791 [Listeria innocua] >gi|25381060|pir||AI... 127 2e-28 ref|NP_466165.1| lmo2642 [Listeria monocytogenes EGD-e] >gi|2538... 115 6e-25 ref|NP_965047.1| hypothetical protein LJ1192 [Lactobacillus john... 62 6e-09 ref|NP_785612.1| lipoprotein precursor [Lactobacillus plantarum ... 62 1e-08 ref|ZP_00045951.1| COG1409: Predicted phosphohydrolases [Lactoba... 60 4e-08 >ref|NP_472120.1| lin2791 [Listeria innocua] pir||AI1780 probable phosphoesterase (EC 3.1.-.-) lin2791 [similarity] - Listeria innocua (strain Clip11262) emb|CAC98017.1| lin2791 [Listeria innocua] Length = 443 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 18/210 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 MHHNL H + G+ +N +Q+ + L N+N LSGHIH Q+I R KS + Sbjct: 242 MHHNLTDHNDVIQKGYTINYNQQVIDALTAGNMNFSLSGHIHTQNI-RSAKSSD------ 294 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 G+ + DI T+A +V PH+YG +T+ + TY S +D+E WAK G +D NLL+F A Sbjct: 295 GKE-ITDIVTNALSVYPHKYGNLTYSAKNKTFTYQSQKLDIEAWAKETGTSDKNLLNFDA 353 Query: 121 YAEKVFADQSYKKAMARLKES----TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 Y + F + Y KAM L S +S+ +K+ MA+ MA N+ +FAG Sbjct: 354 YDYETFYNSGYDKAMMDLMTSESYKNYSQTDKEKMADTMALNNMAFFAGIAP------PK 407 Query: 177 MPGYKLWMGMDGGFMSGYIQSMAVDKALSN 206 G LW F+ Y+ S +V SN Sbjct: 408 SAGMDLWDSAPNSFLKDYVLSSSVPPKQSN 437 >ref|NP_466165.1| lmo2642 [Listeria monocytogenes EGD-e] pir||AB1405 probable phosphoesterase (EC 3.1.-.-) lmo2642 [similarity] - Listeria monocytogenes (strain EGD-e) emb|CAD00720.1| lmo2642 [Listeria monocytogenes] Length = 443 Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 105/201 (52%), Gaps = 18/201 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 +HHNL H + G+ +N +Q+ + L ++ LSGHIH Q+I R KS T G Sbjct: 242 LHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNI-RSAKS----TDG- 295 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 + DI T+A +V PH+YG +T+ + TY S +D+E WAKA G TD NLL+F Sbjct: 296 --KEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQ 353 Query: 121 YAEKVFADQSYKKAMARL--KES--TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 + + F + Y KAM L ES +++ +K+ MA+ M N+ +FAGT D Sbjct: 354 FDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSD---- 409 Query: 177 MPGYKLWMGMDGGFMSGYIQS 197 G LW F+ Y+ S Sbjct: 410 --GMALWDSAPNSFLKDYVLS 428 >ref|NP_965047.1| hypothetical protein LJ1192 [Lactobacillus johnsonii NCC 533] gb|AAS09013.1| hypothetical protein LJ1192 [Lactobacillus johnsonii NCC 533] Length = 410 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 35/211 (16%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDI--ARDPKSGNEGTA 58 MHHNL +H G+ +++ +E K L + N+ LV SGHIH Q+I +DP Sbjct: 207 MHHNLYAHNPAVNKGYVVDDYRELRKLLAQYNVKLVFSGHIHAQNIMLPQDP-------- 258 Query: 59 GAGESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHS-------TSVDVEGWAKANGIT 111 P ++ T++F N YG + P + T H T + + W Sbjct: 259 ----CPATEVVTASFCSNDQGYGVVKVSPKEVSYTCHHFKMKDYLTDKEKQNWT------ 308 Query: 112 DPNLLHFTAYAEKVFADQSYKKAMAR-LKESTFSEPEKKSMAEVMAKLNVNYFAG---TT 167 L HF Y E + + M + L ++ + M + ++N ++F G Sbjct: 309 ---LTHFHDYLENIQLGTISAELMQKNLYQNHDDLDTVRKMGRLFGEMNYHFFTGKNHIE 365 Query: 168 SDALDEIKAMPGYKLWMGMDGGFMSGYIQSM 198 S+ L ++K P Y+ + D Y+Q++ Sbjct: 366 SEELQKLKKSPIYQRLIA-DNPHYELYLQTL 395 >ref|NP_785612.1| lipoprotein precursor [Lactobacillus plantarum WCFS1] emb|CAD64462.1| lipoprotein precursor [Lactobacillus plantarum WCFS1] Length = 440 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 18/185 (9%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 +HHN + HT + + + +++ K + L LSGHIH Q+I + K N+ Sbjct: 241 LHHNTMDHTVIH-QDYTIGYAEDVRKAFTTAGIKLSLSGHIHAQNI-KSTKVKNQS---- 294 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 + DIA+ A + H YG + + + TYH+T ++V + K + + + + Sbjct: 295 ----LTDIASGALILGSHYYGTLKINQSNGTATYHATPLNVSAYIKHHR-GNKAMRAYQK 349 Query: 121 YAEKVFADQSYKKAMARL----KESTFSEPEKKSMAEVMAKLNVNYFAGT---TSDALDE 173 Y V Y A+++L E+ S + +A MA N+ F GT S A+ Sbjct: 350 YDHDVLYAAGYNAALSQLYEDRDETQLSSAKVNQLARGMAAANIALFRGTPVKNSAAIQS 409 Query: 174 IKAMP 178 + MP Sbjct: 410 WQQMP 414 >ref|ZP_00045951.1| COG1409: Predicted phosphohydrolases [Lactobacillus gasseri] Length = 285 Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 MHHNL +H G+ +++ +E K L + N+ LV SGHIH Q+I S Sbjct: 82 MHHNLYAHNPAVNKGYVVDDYRELRKLLAQYNVKLVFSGHIHAQNIMPPQNS-------- 133 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 P ++ T++F N YG + P + T H + + + L HF Sbjct: 134 --CPAMEVVTASFCSNDQVYGVVKVSPKEISYTCH--HFKMRDYLTDKEKLNWTLTHFHD 189 Query: 121 YAEKV----FADQSYKKAMARLKESTFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 Y E + + + +K + R + S + M + ++N ++F G DE++ Sbjct: 190 YLENIQLGTISAELMQKDLYRNHDDLTS---VRQMGRLFGEMNYHFFTGKNHINFDELQK 246 Query: 177 MPGYKLWMGM 186 + +++ + Sbjct: 247 LKKSEIYQRL 256 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 308,266,252 Number of extensions: 11937852 Number of successful extensions: 23320 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 23319 Number of HSP's successfully gapped: 5 Length of query: 216 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 95 Effective length of database: 428,710,599 Effective search space: 40727506905 Effective search space used: 40727506905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)