BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0175.0009.p
         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388319.1| ydaT [Bacillus subtilis] >gi|7474933|pir||C6977...    86   2e-16
ref|NP_464197.1| lmo0670 [Listeria monocytogenes EGD-e] >gi|2551...    75   6e-13
ref|NP_470018.1| lin0675 [Listeria innocua] >gi|25514574|pir||AC...    73   2e-12
ref|ZP_00070214.1| COG4876: Uncharacterized protein conserved in...    72   3e-12
gb|EAG45068.1| unknown [environmental sequence] >gi|43980578|gb|...    71   7e-12

>ref|NP_388319.1| ydaT [Bacillus subtilis]
 pir||C69770 hypothetical protein ydaT - Bacillus subtilis
 dbj|BAA19275.1| FUNCTION UNKNOWN. [Bacillus subtilis]
 emb|CAB12245.1| ydaT [Bacillus subtilis subsp. subtilis str. 168]
          Length = 150

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)

Query: 1  MPWNKDDYPDSLKNFMAPVRNKAIEIANALLDEGYEEGRAISIATAQAKEWGEN 54
          MPW+  DYP SLKN   PVR KAI+IANA++DEGYEEGRAI IAT++AKEW EN
Sbjct: 1  MPWSMKDYPASLKNLEKPVRKKAIDIANAMIDEGYEEGRAIPIATSKAKEWAEN 54


>ref|NP_464197.1| lmo0670 [Listeria monocytogenes EGD-e]
 pir||AF1158 hypothetical protein lmo0670 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAC98748.1| lmo0670 [Listeria monocytogenes]
          Length = 58

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 1  MPWNKDDYPDSLKNFMAPVRNKAIEIANALLDEGYEEGRAISIATAQAKEWGENH 55
          MPW K+DYPDS KN     R KAIEI NALL +GY E RAI IAT++A+EW +NH
Sbjct: 1  MPWTKNDYPDSWKNLKKTEREKAIEIGNALLKDGYSESRAIPIATSKAEEWYKNH 55


>ref|NP_470018.1| lin0675 [Listeria innocua]
 pir||AC1517 hypothetical protein lin0675 [imported] - Listeria innocua
          (strain Clip11262)
 emb|CAC95907.1| lin0675 [Listeria innocua]
          Length = 58

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MPWNKDDYPDSLKNFMAPVRNKAIEIANALLDEGYEEGRAISIATAQAKEWGENH 55
          MPW K++YPDS KN     R KAIEI NALL +GY E RAI IAT++A+EW +NH
Sbjct: 1  MPWTKNEYPDSWKNLRKTEREKAIEIGNALLKDGYSESRAIPIATSKAEEWYKNH 55


>ref|ZP_00070214.1| COG4876: Uncharacterized protein conserved in bacteria
          [Oenococcus oeni MCW]
          Length = 72

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 1  MPWNKDDYPDSLKNFMAPVRNKAIEIANALLDEGYEEGRAISIATAQAKEWGENHDK 57
          MPWN+ DYP S+KN    VR+KAIEIANAL +E Y + RAISIAT QA++W  +H K
Sbjct: 1  MPWNEKDYPVSMKNMKKVVRDKAIEIANALKEEKYSDQRAISIATEQAEKWYRDHHK 57


>gb|EAG45068.1| unknown [environmental sequence]
 gb|EAG47474.1| unknown [environmental sequence]
 gb|EAJ13533.1| unknown [environmental sequence]
          Length = 108

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MPWNKDDYPDSLKNFMAPVRNKAIEIANALLDEGYEEGRAISIATAQAKEWGENH 55
          +PW+ + YP S++N   PVR KAIEIANALL  G  EG AI IA AQAK WG  H
Sbjct: 43 VPWDDERYPPSMRNLPPPVRGKAIEIANALLRRGRAEGSAIRIAIAQAKRWGRVH 97


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.311    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 98,396,680
Number of extensions: 2775000
Number of successful extensions: 7003
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7003
Number of HSP's successfully gapped: 12
Length of query: 64
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 29
Effective length of database: 662,209,113
Effective search space: 19204064277
Effective search space used: 19204064277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)