BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0001.p (785 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis s... 780 0.0 ref|NP_654958.1| UvrD-helicase, UvrD/REP helicase [Bacillus anth... 778 0.0 ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus... 769 0.0 ref|NP_391225.1| yvgS [Bacillus subtilis] >gi|7475489|pir||H7004... 754 0.0 ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus... 718 0.0 >ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] gb|AAP25026.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] Length = 776 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/763 (50%), Positives = 526/763 (68%), Gaps = 6/763 (0%) Query: 9 EEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDDLGETSTSL 68 ++EQ R++ + + ++ I +L +E G R++V+++RK FW++V VN + DD ET +L Sbjct: 6 DQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINL 65 Query: 69 RQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLGIGSLMEDN 128 RQQAQ L + H + L R++ +PYFGRIDFKE ++ AE+IY+G+ +L + + Sbjct: 66 RQQAQSLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGESAAEQIYIGVATLTDAS 125 Query: 129 G-SFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEVMFDTGVT 187 G +FLIYDWRAPISS+YYD PGPA Y TPGG++ G +E K Q++I NG I+ MFDT +T Sbjct: 126 GENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMFDTSLT 185 Query: 188 IGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTSAALQRVA 247 IGDE+LQQ L + M+SIVATIQ+EQN IIR+D R+L+VQGAAGSGKTSAALQR+A Sbjct: 186 IGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIA 245 Query: 248 YLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRLGQEFELE 307 YLLYKYRE L+ADQ++LFSPN +FNSYVS VLPELGEENMQQ TFQ YL HRL + F++E Sbjct: 246 YLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVE 305 Query: 308 DVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKPLVFQGRA 367 D + Q E +L P TR A I +K+S F ++IR Y LE GMLF+ + F+G+ Sbjct: 306 DPYEQLEYMLTETNSPAYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKL 365 Query: 368 VVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIELLDSSDY 427 +VS +E+ ++FY+ D ++ +RI+ +T WL K+I A E + WVE++IELL +Y Sbjct: 366 IVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQIDAIEKAELKKPWVEEEIELLSKDEY 425 Query: 428 QRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVKGLYSLLF 487 Q+AY L++KG ++SF DF+ E VL R IV ++LKPLR + RF++ G+Y LF Sbjct: 426 QKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKLKPLRKGVQTLRFINFTGIYKQLF 485 Query: 488 ADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQGFRTNTQIR 547 D G G +L E WD IC TV L +L YEDATPFL LKEL +GF+TN I+ Sbjct: 486 TDAS----WGTGEKLKE-WDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIK 540 Query: 548 HVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVSVYGRENTE 607 HV+VDE QDYSPFQ EF++RLFP A+MTVLGD NQAI+A + L ++YG + T Sbjct: 541 HVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETN 600 Query: 608 VISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGSIEQDVLNL 667 I+LTRSYRST I+EFTR+++P G+ I F R GE P +T V NE L I V L Sbjct: 601 GINLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKPTVTKVANESELHERITAKVAEL 660 Query: 668 HSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYLAKGVEFDA 727 ++ +A+ICK+A ESA + L ++LV ++ +++G +V+PAYLAKG+EFDA Sbjct: 661 QKQNHNTIAIICKSAAESAAAYEALSPIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA 720 Query: 728 VIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFL 770 VIIYD S+ Y ES R+LFYTACTRAMH L +YS+G+ + F+ Sbjct: 721 VIIYDASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFI 763 >ref|NP_654958.1| UvrD-helicase, UvrD/REP helicase [Bacillus anthracis A2012] Length = 776 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/763 (50%), Positives = 525/763 (68%), Gaps = 6/763 (0%) Query: 9 EEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDDLGETSTSL 68 ++EQ R++ + + ++ I +L +E G R++V+++RK FW++V VN + DD ET +L Sbjct: 6 DQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINL 65 Query: 69 RQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLGIGSLMEDN 128 RQQAQ L + H + L R++ +PYFGRIDFKE ++ AE+IY+G+ +L + + Sbjct: 66 RQQAQSLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGESAAEQIYIGVATLTDAS 125 Query: 129 G-SFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEVMFDTGVT 187 G +FLIYDWRAPISS+YYD PGPA Y TPGG++ G +E K Q++I NG I+ MFDT +T Sbjct: 126 GENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMFDTSLT 185 Query: 188 IGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTSAALQRVA 247 IGDE+LQQ L + M+SIVATIQ+EQN IIR+D R+L+VQGAAGSGKTSAALQR+A Sbjct: 186 IGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIA 245 Query: 248 YLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRLGQEFELE 307 YLLYKYRE L+ADQ++LFSPN +FNSYVS VLPELGEENMQQ TFQ YL HRL + F++E Sbjct: 246 YLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVE 305 Query: 308 DVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKPLVFQGRA 367 D + Q E +L P TR A I +K+S F ++IR Y LE GMLF+ + F+G+ Sbjct: 306 DPYEQLEYMLTETNSPAYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKL 365 Query: 368 VVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIELLDSSDY 427 +VS +E+ ++FY+ D ++ +RI+ +T WL K+I A E + WVE++IELL +Y Sbjct: 366 IVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQIDAIEKAELKKPWVEEEIELLSKDEY 425 Query: 428 QRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVKGLYSLLF 487 Q+AY L++KG ++SF DF+ E VL R IV ++LKPLR + RF++ G+Y LF Sbjct: 426 QKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKLKPLRKGVQTLRFINFTGIYKQLF 485 Query: 488 ADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQGFRTNTQIR 547 D G G +L E WD IC TV L +L YEDATPFL LKEL +GF+TN I+ Sbjct: 486 TDAS----WGTGEKLKE-WDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIK 540 Query: 548 HVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVSVYGRENTE 607 HV+VDE QDYSPFQ EF++RLFP A+MTVLGD QAI+A + L ++YG + T Sbjct: 541 HVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFXQAIFAHASETVNFDTLTNLYGPDETN 600 Query: 608 VISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGSIEQDVLNL 667 I+LTRSYRST I+EFTR+++P G+ I F R GE P +T V NE L I V L Sbjct: 601 GINLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKPTVTKVANESELHERITAKVAEL 660 Query: 668 HSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYLAKGVEFDA 727 ++ +A+ICK+A ESA + L ++LV ++ +++G +V+PAYLAKG+EFDA Sbjct: 661 QKQNHNTIAIICKSAAESAAAYEALSPIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA 720 Query: 728 VIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFL 770 VIIYD S+ Y ES R+LFYTACTRAMH L +YS+G+ + F+ Sbjct: 721 VIIYDASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFI 763 >ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] gb|AAP08028.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] Length = 777 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/761 (50%), Positives = 520/761 (68%), Gaps = 6/761 (0%) Query: 11 EQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDDLGETSTSLRQ 70 EQ R++ + + ++ I +L +E G R++V+++RK FW++V VN + DD ET +LRQ Sbjct: 8 EQKRLDTVIETITEQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQ 67 Query: 71 QAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLGIGSLMEDNG- 129 QAQ L + H + L R++ +PYFGRIDFKE + AE+IY+G+ +L + +G Sbjct: 68 QAQSLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGEPSAEQIYIGVATLTDASGE 127 Query: 130 SFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEVMFDTGVTIG 189 +FLIYDWRAPISS+YYD PGPA Y TP G++ G +E K Q++I NG I+ MFDT +TIG Sbjct: 128 NFLIYDWRAPISSVYYDYPPGPAEYSTPEGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIG 187 Query: 190 DELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTSAALQRVAYL 249 DE+LQQ L + M+SIVATIQ+EQN IIR+D R+L+VQGAAGSGKTSAALQR+AYL Sbjct: 188 DEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYL 247 Query: 250 LYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRLGQEFELEDV 309 LYKYRE L+ADQ++LFSPN +FNSYVS VLPELGEENMQQ TFQ YL HRL + F++ED Sbjct: 248 LYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDP 307 Query: 310 FSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKPLVFQGRAVV 369 + Q E +L P TR A I +K+S F ++IR Y LE GMLF+ + F+G+ + Sbjct: 308 YEQLEYMLTETNSPTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIA 367 Query: 370 SKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIELLDSSDYQR 429 S +E+ ++FY+ D ++ +RI+ +T WL K+I A E + WVE++IELL +YQ+ Sbjct: 368 SAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQIDALEKAELKKPWVEEEIELLSKDEYQK 427 Query: 430 AYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVKGLYSLLFAD 489 AY L++KG ++SF DF+ E VL R IV +++KPLR + RF++ G+Y LF D Sbjct: 428 AYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGIYKQLFTD 487 Query: 490 RELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQGFRTNTQIRHV 549 + E P+ WD IC TV L +L YEDATPFL LKEL +GF+TN I+HV Sbjct: 488 ASWV-----PGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHV 542 Query: 550 IVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVSVYGRENTEVI 609 +VDE QDYSPFQ EF++RLFP A+MTVLGD NQAI+A + L ++YG + T I Sbjct: 543 LVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETNGI 602 Query: 610 SLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGSIEQDVLNLHS 669 +LTRSYRST I+EFTR+++P G+ I F R G P +T V N L I V L + Sbjct: 603 NLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGAKPTVTKVANHNELHEHITAKVAALQT 662 Query: 670 MGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYLAKGVEFDAVI 729 ++ +A+ICK+A ESA + +L + ++LV + +++G +V+PAYLAKG+EFDAVI Sbjct: 663 EQHNTIAIICKSAAESAAAYEELSSIEDIKLVKSTSAEYEQGIVVIPAYLAKGIEFDAVI 722 Query: 730 IYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFL 770 IYD S+ Y ES R+LFYTACTRAMH LH+Y +G+ + F+ Sbjct: 723 IYDASKDVYSNESVRRLFYTACTRAMHELHLYCVGEVSPFV 763 >ref|NP_391225.1| yvgS [Bacillus subtilis] pir||H70040 hypothetical protein yvgS - Bacillus subtilis emb|CAB15350.1| yvgS [Bacillus subtilis subsp. subtilis str. 168] Length = 774 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/773 (48%), Positives = 518/773 (67%), Gaps = 10/773 (1%) Query: 1 MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD 60 M + D EW+EEQ+R++ + K L R L G + D++ +RK FWE+V VNF + Sbjct: 1 MNQQDKEWKEEQSRIDEVLKELEKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHE 60 Query: 61 LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG 120 ET S++QQA++L++RE +H + + LK+ +L SPYFGRIDF E + +AERIY+G Sbjct: 61 AIETMASIKQQAELLSDREHNHRRMDQQLKRIHQLKKSPYFGRIDFIENGEEQAERIYIG 120 Query: 121 IGSLM-EDNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIE 179 + S + E FLIYDWRAPISSLYY+ +PG A YE PG + G M LKRQF+I NGT++ Sbjct: 121 LASCLDEKEEHFLIYDWRAPISSLYYNYSPGKAEYEVPGETIEGEMVLKRQFMIKNGTLK 180 Query: 180 VMFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKT 239 MF+T +TIGDE+LQ+VLSH +D +MK+IV+TIQKEQN IIRN++S++L+VQGAAGSGKT Sbjct: 181 AMFNTDMTIGDEMLQEVLSHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKT 240 Query: 240 SAALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHR 299 SAALQRVAYLLY++R V+ A Q++LFSPN LFNSYVS+VLPELGEENM+Q TFQ Y+EHR Sbjct: 241 SAALQRVAYLLYRHRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHR 300 Query: 300 LGQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFK 359 LG++F+ E F Q E L +G + TR AGIT+K+ ++F I YV L EGM+FK Sbjct: 301 LGRKFKCESPFDQLEYCLTETKGGDFPTRLAGITWKAGLSFQQFINEYVTRLSSEGMIFK 360 Query: 360 PLVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQI 419 ++F+G+ +++KE++Q FYS D + NR++ WLL ++ +ER WV + Sbjct: 361 NIIFRGQKLITKEQIQSYFYSLDQNHSIPNRMEQTAKWLLSELNKLEKKERRKDWVVHEA 420 Query: 420 ELLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDV 479 ELLD DY Y L+ + +F+D+ E+ +LA IV + KPL+ + F+DV Sbjct: 421 ELLDKEDYLDVYKKLQERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVRLLAFLDV 480 Query: 480 KGLYSLLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQG 539 LY LF+ G+ E DAI T ++ + N+L YEDA PFLY+++L +G Sbjct: 481 TQLYLQLFSG-------WGGKFQHEKMDAIGELTRSAFTDNKLLYEDAAPFLYMQDLIEG 533 Query: 540 FRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVS 599 + NT+I+H+ +DE QDYSPFQ+ +MR +FP A MTVLGD+NQ+IYA + GD + + Sbjct: 534 RKKNTKIKHLFIDEAQDYSPFQMAYMRSIFPAASMTVLGDINQSIYAHT-INGD-QRMDA 591 Query: 600 VYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGS 659 + E E + L R+YRST +IVEFT++M+ G I PFNR GE PL+ + E L Sbjct: 592 CFEDEPAEYVRLKRTYRSTRQIVEFTKAMLQDGADIEPFNRSGEMPLVVKTEGHESLCQK 651 Query: 660 IEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYL 719 + Q++ L G+ +AVICKTA + + HA + VRL+ K+ FQKG V+P YL Sbjct: 652 LAQEIGRLKKKGHETIAVICKTAHQCIQAHAHMSEYTDVRLIHKENQPFQKGVCVIPVYL 711 Query: 720 AKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPA 772 AKG+EFDAV++YD SE Y E +R+L YTACTRAMH+L ++ G+ + F+ A Sbjct: 712 AKGIEFDAVLVYDASEEHYHTEHDRRLLYTACTRAMHMLAVFYTGEASPFVTA 764 >ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42422.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 768 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/766 (46%), Positives = 500/766 (65%), Gaps = 13/766 (1%) Query: 6 SEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDDLGETS 65 S ++EE+ RVN + + + ++ L +G +S++V +RK+FWE+V VN + + ET+ Sbjct: 2 SHYKEEKKRVNIVIEKVDEELKELDGRVGSVKSEIVSIRKNFWEDVKVNIDNIKEAVETA 61 Query: 66 TSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLGIGSLM 125 S+RQ+A++L ERE H + K+ +PYFGRIDFKE +A+A+ +Y+GIGS Sbjct: 62 ASIRQEAELLAEREHTHRHTKNEYNLLMKIKETPYFGRIDFKEDDEADADEMYIGIGSFY 121 Query: 126 E-DNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEVMFDT 184 + +N FL+YDWRAPISSLYYD G A Y+ P G +SG + LKRQ++I NGTI+ MFDT Sbjct: 122 DKENDEFLVYDWRAPISSLYYDYTLGRAQYKAPIGTISGDLLLKRQYMIRNGTIQSMFDT 181 Query: 185 GVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTSAALQ 244 GVTIGDELLQ+ L +A ++MKSIV TIQ+EQN IIRND+S +L+VQG AGSGKTSAALQ Sbjct: 182 GVTIGDELLQEALGRNASEQMKSIVTTIQREQNQIIRNDKSDVLIVQGTAGSGKTSAALQ 241 Query: 245 RVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRLGQEF 304 RVAYLLY YR + ADQMLLFSPN LFNSY++ VLPELGEENMQQTTFQ Y+EH +G+ F Sbjct: 242 RVAYLLYHYRGTVYADQMLLFSPNELFNSYIANVLPELGEENMQQTTFQAYVEHVIGKSF 301 Query: 305 ELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKPLVFQ 364 +ED F+Q E +L TR GI YKSSV F+ ++ +Y L +G+ F + + Sbjct: 302 TVEDSFAQLEYVLTKKHESTYETRVKGIQYKSSVEFMGLLEKYAKSLGEKGLHFHDVTCK 361 Query: 365 GRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIELLDS 424 ++ + + FYS D I + NR+ L W+L+K+ + E + WVE +++ L+ Sbjct: 362 SEVLIKAKSICDYFYSLDMSIAIPNRMQLTMEWVLRKLNDFEKIEAKKDWVEREVQYLNK 421 Query: 425 SDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVKGLYS 484 DY R Y + +++ FD ++ E +L +Y+V + + LR K+ FV+ ++ Sbjct: 422 EDYNRIYEKIE-----KDNQFDYYEKEHELLTKYVVKKHFRSLRRKVKKFAFVNHPAIFE 476 Query: 485 LLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQGFRTNT 544 LF ++ +P+ W+ IC+QTV L +LA ED TP+L+LKEL +GF+TN Sbjct: 477 QLFESKQ------KDIFVPDCWEDICKQTVKRLKDKQLANEDVTPYLFLKELLEGFKTNH 530 Query: 545 QIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVSVYGRE 604 ++ V +DEVQDY+ FQL F++RLFP+AK T+LGDLNQ I++ + + + +++ Sbjct: 531 LVKFVFIDEVQDYTSFQLAFLKRLFPKAKWTLLGDLNQNIFSH-DYNRENNFISALFANR 589 Query: 605 NTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGSIEQDV 664 E + L RSYRST I+EFT+ MIP G I FNR G+ P+ V +E + ++ V Sbjct: 590 KVETVQLNRSYRSTKPIIEFTKCMIPNGNDIEAFNRDGKKPVYIKVSDEREHVENMIFKV 649 Query: 665 LNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYLAKGVE 724 L G+ +AVICKT EE +V + N L V L+ K+ ++KG +V+PAYLAKG+E Sbjct: 650 KELEEKGHKTIAVICKTNEECMKVMELIGNTLHVHLMKKENTTYEKGVVVIPAYLAKGIE 709 Query: 725 FDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFL 770 FDAVII+D S Y RESER LFYTACTRAMH L++Y G+ FL Sbjct: 710 FDAVIIFDASHESYYRESERNLFYTACTRAMHELYVYYAGELTEFL 755 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,133,487,251 Number of extensions: 47792179 Number of successful extensions: 150234 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 150224 Number of HSP's successfully gapped: 72 Length of query: 785 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 651 Effective length of database: 393,414,312 Effective search space: 256112717112 Effective search space used: 256112717112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)