BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0001.p
         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_694384.1| hypothetical protein OB3462 [Oceanobacillus ihe...    99   4e-20
ref|NP_469392.1| highly similar to B. subtilis YybT protein [Lis...    96   4e-19
ref|NP_463585.1| highly similar to B. subtilis YybT protein [Lis...    95   4e-19
ref|NP_244899.1| BH4031~unknown conserved protein in B. subtilis...    95   5e-19
ref|NP_783876.1| exopolyphosphatase-related protein (putative) [...    94   1e-18

>ref|NP_694384.1| hypothetical protein OB3462 [Oceanobacillus iheyensis HTE831]
 dbj|BAC15418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 658

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 7   LLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAAV 66
           +LIAQTADTLL MT + ASFVISER DG IGISARSLG +NVQV+MEK+ GGGHL+NAA 
Sbjct: 571 VLIAQTADTLLTMTGISASFVISERFDGKIGISARSLGDVNVQVIMEKMNGGGHLTNAAT 630

Query: 67  QLEGTS 72
           Q+  T+
Sbjct: 631 QINDTT 636


>ref|NP_469392.1| highly similar to B. subtilis YybT protein [Listeria innocua]
 pir||AF1438 B. subtilis YybT protein homolog lin0045 [imported] - Listeria
           innocua (strain Clip11262)
 emb|CAC95278.1| lin0045 [Listeria innocua]
          Length = 657

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 7   LLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAAV 66
           ++ AQ ADT+L M  V ASFVI+ RPD LIGISARSLG++NVQV+MEKLGGGGHLSNAA 
Sbjct: 572 VIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGGHLSNAAT 631

Query: 67  QLEGTS 72
           QL+  +
Sbjct: 632 QLKDVT 637


>ref|NP_463585.1| highly similar to B. subtilis YybT protein [Listeria monocytogenes
           EGD-e]
 pir||AE1081 B. subtilis YybT protein homolog lmo0052 [imported] - Listeria
           monocytogenes (strain EGD-e)
 emb|CAC98267.1| lmo0052 [Listeria monocytogenes]
          Length = 657

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 7   LLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAAV 66
           ++ AQ ADT+L M  V ASFVI+ RPD LIGISARSLG++NVQV+MEKLGGGGHLSNAA 
Sbjct: 572 VIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGGHLSNAAT 631

Query: 67  QLEGTS 72
           QL+  +
Sbjct: 632 QLKDVT 637


>ref|NP_244899.1| BH4031~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
 pir||G84153 hypothetical protein BH4031 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB07750.1| BH4031~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
          Length = 654

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 53/67 (79%)

Query: 6   QLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAA 65
           QLLIAQ ADTLL M  VVASFVIS R DG++ ISARSLG +NVQ++ME L GGGHL+NAA
Sbjct: 568 QLLIAQAADTLLTMKGVVASFVISRRHDGVVSISARSLGDVNVQLIMESLDGGGHLTNAA 627

Query: 66  VQLEGTS 72
            Q E  +
Sbjct: 628 TQFEDAT 634


>ref|NP_783876.1| exopolyphosphatase-related protein (putative) [Lactobacillus
           plantarum WCFS1]
 emb|CAD62712.1| exopolyphosphatase-related protein (putative) [Lactobacillus
           plantarum WCFS1]
          Length = 670

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 52/63 (82%)

Query: 10  AQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAAVQLE 69
           AQ AD+LL M+ V ASFVI+ R DG +GISARSLG +NVQV MEKLGGGGHLSNAA Q+E
Sbjct: 585 AQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQIE 644

Query: 70  GTS 72
           G S
Sbjct: 645 GQS 647


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 98,292,299
Number of extensions: 2861917
Number of successful extensions: 6030
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 6027
Number of HSP's successfully gapped: 35
Length of query: 94
Length of database: 757,237,578
Length adjustment: 62
Effective length of query: 32
Effective length of database: 588,901,440
Effective search space: 18844846080
Effective search space used: 18844846080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)