BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0014.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242264.1| BH1398~unknown [Bacillus halodurans] >gi|254898...    63   2e-09
ref|NP_977145.1| conserved hypothetical protein [Bacillus cereus...    52   5e-06

>ref|NP_242264.1| BH1398~unknown [Bacillus halodurans]
 pir||F83824 hypothetical protein BH1398 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB05117.1| BH1398~unknown [Bacillus halodurans]
          Length = 73

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 7  LVKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEE-MAGQGHHDYAGNSSATC 65
          +VKC+VSNC YWGE+N C AD IL+EID +    +  E   E  A     + A +S  TC
Sbjct: 5  IVKCNVSNCMYWGEENRCHADAILVEIDANQHRDYDMEAGREPYATAEKREVAKSSGETC 64

Query: 66 CLTFKP 71
          C TF+P
Sbjct: 65 CYTFRP 70


>ref|NP_977145.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS39753.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 71

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 8  VKCSVSNCHYWGEQNLCRADEILIEID-KHSGNAFKEEYAEE-MAGQGHHDYAGNSSATC 65
          V+CSVSNC +WG+ N C+A  I+++ D   +G    E Y    +  +        S  TC
Sbjct: 4  VRCSVSNCSFWGQGNFCQASAIIVQPDADETGQTENESYTSAVLTNETLESSVATSVETC 63

Query: 66 CLTFKP 71
          C TFKP
Sbjct: 64 CHTFKP 69


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 108,786,787
Number of extensions: 3464699
Number of successful extensions: 7262
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7258
Number of HSP's successfully gapped: 4
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)