BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0004.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391432.1| similar to transcriptional regulator [Bacillus ... 117 4e-25 ref|NP_981675.1| transcriptional regulator [Bacillus cereus ATCC... 117 4e-25 ref|NP_847666.1| transcription antiterminator LytR [Bacillus ant... 112 1e-23 ref|NP_653714.1| hypothetical protein predicted by GeneMark [Bac... 109 1e-22 ref|NP_563039.1| probable membrane-bound protein [Clostridium pe... 108 2e-22 >ref|NP_391432.1| similar to transcriptional regulator [Bacillus subtilis] pir||H70041 probable transcription regulator yvhJ - Bacillus subtilis gb|AAC44935.1| putative transcriptional regulator emb|CAB15569.1| yvhJ [Bacillus subtilis subsp. subtilis str. 168] Length = 391 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 142/271 (52%), Gaps = 27/271 (9%) Query: 90 ERPITMLLLGT-DNRPKHPSNLTDVIMVAALNPTTQSATVVSLPRDTYVELSG---YKKT 145 ++P ++L +G D K +D ++V L+P ++ ++S+PRDT V+L+G KT Sbjct: 74 KKPFSILFMGIEDYATKGQKGRSDSLIVVTLDPKNKTMKMLSIPRDTRVQLAGDTTGSKT 133 Query: 146 KINEFYARFKSKEKTSGIPAEDEMKKMMGKYLDIDVDYATVLDFQGFRDVVDELGGVDVN 205 KIN Y++ +DE + + +L I +D +DF GF+DV++E+GG+DV+ Sbjct: 134 KINAAYSK----------GGKDETVETVENFLQIPIDKYVTVDFDGFKDVINEVGGIDVD 183 Query: 206 ISENMCYTDSVDGTD-INLTKGPARLDGDDALDYVRYRKSNCRPKTKASDDFDRNKRQNE 264 + + VD + I KG L+G++AL Y R RK + R DF RN RQ + Sbjct: 184 VPFDFDEKSDVDESKRIYFKKGEMHLNGEEALAYARMRKQDKRG------DFGRNDRQKQ 237 Query: 265 VLNSLVGQMQSLGGVLKIGKVLDAVDDNMKTDIENEQIKNIISAYWKISKENIEFKPVTG 324 +LN+L+ +M S + KI K+ + +N++T+I + + Y + + I+ +TG Sbjct: 238 ILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIYSGFTSKKIDTLSITG 297 Query: 325 T--WRSP----YVYINDKELEAAKQSLHDRI 349 + + P Y + LE +++L + + Sbjct: 298 SDLYLGPNNTYYFEPDATNLEKVRKTLQEHL 328 >ref|NP_981675.1| transcriptional regulator [Bacillus cereus ATCC 10987] gb|AAS44283.1| transcriptional regulator [Bacillus cereus ATCC 10987] Length = 302 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 38/266 (14%) Query: 92 PITMLLLGTDNRPKHPSNLTDVIMVAALNPTTQSATVVSLPRDTYVELSGYKKT-KINEF 150 P+++LLLG D R + +D +MV LNP S VS+PRDTY E+ G K+ KIN Sbjct: 59 PVSILLLGADERGEDKGR-SDSLMVITLNPKNNSMKTVSIPRDTYTEIVGKGKSDKINHA 117 Query: 151 YARFKSKEKTSGIPAEDEMKKMMGKYLDIDVDYATVLDFQGFRDVVDELGGVDVNISENM 210 YA D + K+L++ ++Y ++ +GF+D+VD +GGVDVN Sbjct: 118 YA----------FGGVDMSVATVEKFLNVPINYYIEVNMEGFKDIVDAVGGVDVNNDLEF 167 Query: 211 CYTDSVDGTDINLTKGPARLDGDDALDYVRYRKSNCRPKTKASDDFDRNKRQNEVLNSLV 270 S++G + KG L+GD AL Y R RK + R DF R RQ +V+ +++ Sbjct: 168 ----SLEGK--HFQKGNIHLNGDQALAYTRMRKEDPRG------DFGRQMRQRQVMQAVI 215 Query: 271 GQMQSLGGVLKIGKVLDAVDDNMKTDIENEQIKNIISAYWKISK--ENIEF-----KPVT 323 + S + G VL A+ N+KT++ +Q+ ++ Y K E+I+ K Sbjct: 216 KKGASFSSLSSYGDVLTAIQKNVKTNLTQDQMFDMQKNYKDCLKNSEDIQIPGDGHKAAD 275 Query: 324 GTWRSPYVYINDKELEAAKQSLHDRI 349 G W Y Y+ D AAKQ L +++ Sbjct: 276 GIW---YYYVPD----AAKQDLTNKL 294 >ref|NP_847666.1| transcription antiterminator LytR [Bacillus anthracis str. Ames] sp|Q81K33|LYTR_BACAA Membrane-bound protein lytR gb|AAP29152.1| transcription antiterminator LytR [Bacillus anthracis str. Ames] Length = 303 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 38/266 (14%) Query: 92 PITMLLLGTDNRPKHPSNLTDVIMVAALNPTTQSATVVSLPRDTYVELSGYKKT-KINEF 150 P+++LLLG D R + +D +MV LNP S VS+PRDTY E+ G K+ KIN Sbjct: 60 PVSILLLGADERGEDKGR-SDSLMVITLNPKNNSMKTVSIPRDTYTEIVGKGKSDKINHA 118 Query: 151 YARFKSKEKTSGIPAEDEMKKMMGKYLDIDVDYATVLDFQGFRDVVDELGGVDVNISENM 210 YA D + +L++ ++Y ++ +GF+D+VD +GGVDV ++ Sbjct: 119 YA----------FGGVDMSVATVENFLNVPINYYIEVNMEGFKDIVDAVGGVDV--KNDL 166 Query: 211 CYTDSVDGTDINLTKGPARLDGDDALDYVRYRKSNCRPKTKASDDFDRNKRQNEVLNSLV 270 +T DG + KG L GD AL + R RK + R DF R RQ +V+ ++ Sbjct: 167 EFTQ--DGH--HFAKGNIHLTGDQALAFTRMRKQDPRG------DFGRQMRQRQVMQGVI 216 Query: 271 GQMQSLGGVLKIGKVLDAVDDNMKTDIENEQIKNIISAYWKISK--ENIEF-----KPVT 323 + S + G VL A+ N+KT++ +Q+ ++ Y K E+I+ K Sbjct: 217 KKGASFSSLTGYGDVLSAIQKNVKTNLTQDQMFDMQKNYKDCLKNSEDIQIPGDGHKAAD 276 Query: 324 GTWRSPYVYINDKELEAAKQSLHDRI 349 G W Y Y+ D AAKQ L +++ Sbjct: 277 GIW---YYYVPD----AAKQDLTNKL 295 >ref|NP_653714.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 303 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 38/266 (14%) Query: 92 PITMLLLGTDNRPKHPSNLTDVIMVAALNPTTQSATVVSLPRDTYVELSGYKKT-KINEF 150 P+++LLL D R + +D +MV LNP S VS+PRDTY E+ G K+ KIN Sbjct: 60 PVSILLLXADERGEDKGR-SDSLMVITLNPKNNSMKTVSIPRDTYTEIVGKGKSDKINHA 118 Query: 151 YARFKSKEKTSGIPAEDEMKKMMGKYLDIDVDYATVLDFQGFRDVVDELGGVDVNISENM 210 YA D + +L++ ++Y ++ +GF+D+VD +GGVDV ++ Sbjct: 119 YA----------FGGVDMSVATVENFLNVPINYYIEVNMEGFKDIVDAVGGVDV--KNDL 166 Query: 211 CYTDSVDGTDINLTKGPARLDGDDALDYVRYRKSNCRPKTKASDDFDRNKRQNEVLNSLV 270 +T DG + KG L GD AL + R RK + R DF R RQ +V+ ++ Sbjct: 167 EFTQ--DGH--HFAKGNIHLTGDQALAFTRMRKQDPRG------DFGRQMRQRQVMQGVI 216 Query: 271 GQMQSLGGVLKIGKVLDAVDDNMKTDIENEQIKNIISAYWKISK--ENIEF-----KPVT 323 + S + G VL A+ N+KT++ +Q+ ++ Y K E+I+ K Sbjct: 217 KKGASFSSLTGYGDVLSAIQKNVKTNLTQDQMFDMQKNYKDCLKNSEDIQIPGDGHKAAD 276 Query: 324 GTWRSPYVYINDKELEAAKQSLHDRI 349 G W Y Y+ D AAKQ L +++ Sbjct: 277 GIW---YYYVPD----AAKQDLTNKL 295 >ref|NP_563039.1| probable membrane-bound protein [Clostridium perfringens] dbj|BAB81829.1| probable membrane-bound protein [Clostridium perfringens str. 13] Length = 437 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 29/292 (9%) Query: 14 GNPRNGRPQPNSAARTVQKKKPVKK--RGALARTGKMXXXXXXXXXXXXXGYAGYLYWKF 71 GN N R + + + KK VK+ GALA GY + Y F Sbjct: 2 GNEEN-RFEKRQDKKNINKKSLVKRIILGALAFI--------LIFFISIFGYFYFKYGSF 52 Query: 72 DHGSFGVDKPVQAGHSAAERPITMLLLGTD-----NRPKHPSNLTDVIMVAALNPTTQSA 126 F + K V+ E PI +LLLG D + + TD I++A +P T+ A Sbjct: 53 LGEVFNIVKDVKQDVIKVEEPINVLLLGMDIGDTSDVSNKDAKRTDTIILANFDPITKEA 112 Query: 127 TVVSLPRDTYVELSGYKKTKINEFYARFKSKEKTSGIPAEDEMKKMMGKYLDIDVDYATV 186 ++S+PRDT V++ G K KIN Y I E +K+++G L + VDY Sbjct: 113 KLISIPRDTRVKIGG-KSQKINAAYP----------IGGEKLVKQLVGNILGVKVDYVVK 161 Query: 187 LDFQGFRDVVDELGGVDVNISENMCYTDSVDGTDINLTKGP-ARLDGDDALDYVRYRKSN 245 +D++GFR ++D +GG+D+ I ++M Y D I+ KG LDG A ++ R+RK+N Sbjct: 162 VDYEGFRGIIDAIGGIDMYIEQDMNYDDPGQDLHIHFNKGETVHLDGKKAEEFFRWRKNN 221 Query: 246 CRPKTKASDDFDRNKRQNEVLNSLVGQMQSLGGVLKIGKVLDAVDDNMKTDI 297 A+ D DR K Q + +N+++ ++ S+ + KI + + ++ N++T+I Sbjct: 222 DGTGL-ANGDVDRIKNQQKFINAVIDKVLSVSTITKIDSIAEILNKNIETNI 272 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 524,164,439 Number of extensions: 21782672 Number of successful extensions: 48061 Number of sequences better than 1.0e-05: 241 Number of HSP's gapped: 47725 Number of HSP's successfully gapped: 241 Length of query: 364 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 237 Effective length of database: 412,420,005 Effective search space: 97743541185 Effective search space used: 97743541185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)