BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0003.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243496.1| BH2630~unknown [Bacillus halodurans] >gi|253703... 142 2e-33 ref|NP_980294.1| conserved hypothetical protein [Bacillus cereus... 122 3e-27 ref|NP_846400.1| conserved hypothetical protein [Bacillus anthra... 120 9e-27 ref|NP_833671.1| GTPase [Bacillus cereus ATCC 14579] >gi|2989759... 118 4e-26 ref|NP_657991.1| hypothetical protein predicted by GeneMark [Bac... 117 1e-25 >ref|NP_243496.1| BH2630~unknown [Bacillus halodurans] pir||F83978 hypothetical protein BH2630 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06349.1| BH2630~unknown [Bacillus halodurans] Length = 151 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/143 (47%), Positives = 98/143 (68%) Query: 8 LNETLLTMLQSETFVLLNTVDAETGGPTSTAISWIYAVSPSIVRLAVDHRSRLVNNMKVN 67 L + LL +L+ E FV L+TVD ETG P AISW++A + VR+AVD+RSR+V N+K Sbjct: 9 LTDELLPLLKGERFVTLSTVDWETGAPIVRAISWVFAPANDRVRMAVDNRSRIVANVKKT 68 Query: 68 PLVTITVFGEGTVHAINGRALVRQDPLPDVPFKMCCFDVEIEAVRNALFYGAQLESAPKY 127 P VT+ + G G+ ++I+G A + ++ L +VP K+ ++ I VR+ +FYGA++ S P Y Sbjct: 69 PAVTLLLVGNGSAYSISGHATIVEESLDNVPLKLALIEMNIHEVRDVMFYGAKIVSEPMY 128 Query: 128 AKVYDARAAEKLDGQVFAAMQKA 150 K YD AA KLDGQV AA+Q+A Sbjct: 129 DKTYDEEAAAKLDGQVMAALQQA 151 >ref|NP_980294.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42902.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 151 Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 88/142 (61%) Query: 8 LNETLLTMLQSETFVLLNTVDAETGGPTSTAISWIYAVSPSIVRLAVDHRSRLVNNMKVN 67 L + L+ L+ E V++ T D E P +AISW+YAVS + +R AVD RSR+V N++ + Sbjct: 9 LTDDLVQTLRKECIVMVATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHS 68 Query: 68 PLVTITVFGEGTVHAINGRALVRQDPLPDVPFKMCCFDVEIEAVRNALFYGAQLESAPKY 127 V +T+ +V +I+G + D + +P K+ +V ++ VR+ +FYGA+L P Y Sbjct: 69 TGVVLTIMANESVFSISGAGEILTDRMEGIPLKLTVIEVNVQEVRDVMFYGAKLAIEPTY 128 Query: 128 AKVYDARAAEKLDGQVFAAMQK 149 K YD RAA+KLD QV A M++ Sbjct: 129 EKTYDLRAAKKLDNQVLAGMKE 150 >ref|NP_846400.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP27886.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 151 Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%) Query: 8 LNETLLTMLQSETFVLLNTVDAETGGPTSTAISWIYAVSPSIVRLAVDHRSRLVNNMKVN 67 L + L+ L+ + V++ T D E P +AISW+YAVS + +R AVD RSR+V N++ + Sbjct: 9 LTDDLVQTLRKDCIVMVATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHS 68 Query: 68 PLVTITVFGEGTVHAINGRALVRQDPLPDVPFKMCCFDVEIEAVRNALFYGAQLESAPKY 127 V +T+ +V +I+G + D + +P K+ +V ++ VR+ +FYGA+L + P Y Sbjct: 69 TGVVLTIMANESVFSISGAGEILTDRMESIPLKLTVIEVNVKEVRDVMFYGAKLATEPTY 128 Query: 128 AKVYDARAAEKLDGQVFAAMQK 149 K YD RAA+KLD QV M++ Sbjct: 129 EKTYDLRAAKKLDNQVLVGMKE 150 >ref|NP_833671.1| GTPase [Bacillus cereus ATCC 14579] gb|AAP10872.1| GTPase [Bacillus cereus ATCC 14579] Length = 177 Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 87/142 (61%) Query: 8 LNETLLTMLQSETFVLLNTVDAETGGPTSTAISWIYAVSPSIVRLAVDHRSRLVNNMKVN 67 L E L+ L+ E V++ T D E P +AISW+YAVS + +R AVD RSR+V N++ N Sbjct: 35 LTEDLVQTLRKECIVMIATTDFEKQVPNVSAISWVYAVSETSIRFAVDQRSRIVENIRHN 94 Query: 68 PLVTITVFGEGTVHAINGRALVRQDPLPDVPFKMCCFDVEIEAVRNALFYGAQLESAPKY 127 V +T+ +V +I+G + D + + K+ +V+++ VR+ +FYGA+L P Y Sbjct: 95 TGVVLTIMANESVFSISGAGEILTDRMEGISLKLTVIEVKVQEVRDVMFYGAKLAIEPTY 154 Query: 128 AKVYDARAAEKLDGQVFAAMQK 149 K YD RAA+KLD +V +++ Sbjct: 155 EKTYDLRAAKKLDNEVLVGIRE 176 >ref|NP_657991.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 135 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 84/134 (62%) Query: 16 LQSETFVLLNTVDAETGGPTSTAISWIYAVSPSIVRLAVDHRSRLVNNMKVNPLVTITVF 75 ++ + V++ T D E P +AISW+YAVS + +R AVD RSR+V N++ + V +T+ Sbjct: 1 MRKDCIVMVATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHSTGVVLTIM 60 Query: 76 GEGTVHAINGRALVRQDPLPDVPFKMCCFDVEIEAVRNALFYGAQLESAPKYAKVYDARA 135 +V +I+G + D + +P K+ +V ++ VR+ +FYGA+L + P Y K YD RA Sbjct: 61 ANESVFSISGAGEILTDRMESIPLKLTVIEVNVKEVRDVMFYGAKLATEPTYEKTYDLRA 120 Query: 136 AEKLDGQVFAAMQK 149 A+KLD QV M++ Sbjct: 121 AKKLDNQVLVGMKE 134 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 196,659,161 Number of extensions: 6931797 Number of successful extensions: 15008 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 15008 Number of HSP's successfully gapped: 6 Length of query: 151 Length of database: 757,237,578 Length adjustment: 110 Effective length of query: 41 Effective length of database: 458,576,688 Effective search space: 18801644208 Effective search space used: 18801644208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)