BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0001.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243495.1| BH2629~unknown conserved protein [Bacillus halo... 545 e-153 ref|NP_833670.1| PhoH protein [Bacillus cereus ATCC 14579] >gi|4... 543 e-153 ref|NP_389364.1| similar to phosphate starvation inducible prote... 542 e-153 ref|NP_657990.1| PhoH, PhoH-like protein [Bacillus anthracis A2012] 540 e-152 ref|NP_846399.1| PhoH family protein [Bacillus anthracis str. Am... 533 e-150 >ref|NP_243495.1| BH2629~unknown conserved protein [Bacillus halodurans] pir||E83978 hypothetical protein BH2629 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06348.1| BH2629~unknown conserved protein [Bacillus halodurans] Length = 442 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 267/443 (60%), Positives = 335/443 (75%), Gaps = 1/443 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 MKK +VLDTNVLL DP++IFAF+++EVVIPAVVLEE+DSKKR DEIGRNAR S+L+D Sbjct: 1 MKKTYVLDTNVLLQDPHAIFAFQDNEVVIPAVVLEEVDSKKRYMDEIGRNARHFSKLIDQ 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 LR LG LH GV LE+GG L++ELNH+S+ KV++ F E++NDNRI+AVALN EE EK Sbjct: 61 LRGLGKLHEGVPLENGGKLRIELNHKSYEKVKDSFAEMTNDNRIIAVALNLSLEETEKPN 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 V+LVSKD LVR+KAD L + ED+L+DR + Y GY L V ++I YY Sbjct: 121 GNQVILVSKDALVRVKADALRLKAEDFLNDRVIQYDRGYTGYAELYVDSNVIKHYYDQGE 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 ++ + ++ ++P YPH+F+IMKD +G SA+ KV+ + +++P VWGI RN Q Sbjct: 181 VATRDVS-NHPFYPHQFIIMKDALGGSSSAIGKVSPNGEKIKPFVSELQEVWGIRPRNVQ 239 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 QRMALE+LL++DI LV + ED Y KL++ARPVVP+GKDI Sbjct: 240 QRMALEMLLHEDIKLVTMIGKAGTGKTLLSLAAGLLQTEDFGYYNKLVVARPVVPLGKDI 299 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 G+LPGEK+EKLRPWMQPIYDNLE+LF+TKK G+ID+IL G+GSIQVEALTYIRGRSIP Q Sbjct: 300 GFLPGEKEEKLRPWMQPIYDNLEYLFNTKKPGEIDQILAGMGSIQVEALTYIRGRSIPDQ 359 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FIIIDEAQNL++HEVKTI++R GEGSK++LMGDP QIDHPYLD ++NGL+Y+VE FK Q Sbjct: 360 FIIIDEAQNLTKHEVKTILTRVGEGSKIVLMGDPAQIDHPYLDESNNGLTYVVESFKSQA 419 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 IS H+ L KGERS LAQLAADLL Sbjct: 420 ISAHVKLVKGERSGLAQLAADLL 442 >ref|NP_833670.1| PhoH protein [Bacillus cereus ATCC 14579] ref|NP_980293.1| PhoH family protein [Bacillus cereus ATCC 10987] gb|AAP10871.1| PhoH protein [Bacillus cereus ATCC 14579] gb|AAS42901.1| PhoH family protein [Bacillus cereus ATCC 10987] Length = 442 Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/443 (60%), Positives = 338/443 (76%), Gaps = 1/443 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 M KI+VLDTNVLL DP SIF+F+ +EVVIPAVVLEE+DSKKR DE+GRNAR VS+L+D Sbjct: 1 MDKIYVLDTNVLLQDPLSIFSFETNEVVIPAVVLEEVDSKKRYMDEVGRNARYVSKLIDK 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 RE+G LH + LE+GGT ++ELNHRSFV++Q++F E +NDNRILAVA N EE EK + Sbjct: 61 FREIGKLHESIPLENGGTFRIELNHRSFVQLQDIFVEKTNDNRILAVAKNLSLEEQEKED 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 + V+LVSKDVLVR+KAD +G+ EDYLSDR ++ +Y+G+ + +D +Y Sbjct: 121 GKSVILVSKDVLVRVKADAIGLKAEDYLSDRVIEVENIYSGFLEGYISKEQLDYFYEKGE 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 L + ++A ++P YP++FV+MKD +G SAL V+ +++ L N+ VWGI RN Q Sbjct: 181 LPLSEIA-NHPFYPNQFVVMKDALGGSSSALGIVDHLGKKVKKLIFHNEQVWGIRPRNVQ 239 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 Q M LELLL +DIPLV + ED YKKLL+ARP+VP+GKDI Sbjct: 240 QIMGLELLLREDIPLVTLTGKAGTGKTLLALASGLMQTEDLGLYKKLLVARPIVPVGKDI 299 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKLRPWMQPI+DNLE+LF+TKK G++D IL G+GSI+VEALTYIRGRSIP Q Sbjct: 300 GYLPGEKEEKLRPWMQPIFDNLEYLFNTKKPGELDAILAGMGSIEVEALTYIRGRSIPDQ 359 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FIIIDEAQNL++HEVKTI++R GE SK++LMGDP+QIDHPYLD +NGL+Y+VEKFK+Q Sbjct: 360 FIIIDEAQNLTKHEVKTILTRVGEKSKIVLMGDPQQIDHPYLDEYNNGLTYVVEKFKEQR 419 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 ISGH+ KGERS+LAQLAADLL Sbjct: 420 ISGHVKFVKGERSNLAQLAADLL 442 >ref|NP_389364.1| similar to phosphate starvation inducible protein [Bacillus subtilis] pir||A69873 phosphate starvation inducible protein homolog ylaK - Bacillus subtilis emb|CAB09716.1| ylaK [Bacillus subtilis] emb|CAB13354.1| ylaK [Bacillus subtilis subsp. subtilis str. 168] Length = 442 Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust. Identities = 267/443 (60%), Positives = 336/443 (75%), Gaps = 1/443 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 M KI+VLDTNVLL DPN+IF+F+E+EVVIPAVVLEE+DSKKR DE+GRNAR VS+L+D Sbjct: 1 MSKIYVLDTNVLLQDPNAIFSFEENEVVIPAVVLEEVDSKKRYMDEVGRNARHVSKLIDA 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 LR+ G LH V L+ GGTL++ELNHRSF ++QE+F E +NDNRILAVA N EE K Sbjct: 61 LRQKGRLHEHVPLDTGGTLRIELNHRSFHQLQEIFIEKTNDNRILAVAKNLSLEEETKEN 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 RPV+LVSKDVLVR+KAD +G+ ED+L+DR D +E+Y+GY+ L + L +Y Sbjct: 121 GRPVILVSKDVLVRVKADAIGLLAEDFLNDRVVDNDEMYSGYKDLYISQQLFSSFYGKNQ 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 +SV + + YP++F +MKDE+G SA+ + + L+ L ++ +WGI +N Q Sbjct: 181 ISVNDVK-QHAFYPNQFALMKDELGGSSSAVGIADKTGTVLKRLVFDDEHIWGIRPKNVQ 239 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 Q MALELLL +DIPLV + ED YKKL++ARP+VP+GKDI Sbjct: 240 QTMALELLLREDIPLVTLIGKAGTGKTLLALAAGLLQTEDLGIYKKLVVARPIVPVGKDI 299 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKL+PWMQPI+DNLEFLF+ KK G++D IL G+GSIQVEALTYIRGRSIP Q Sbjct: 300 GYLPGEKEEKLKPWMQPIFDNLEFLFNAKKPGELDAILAGIGSIQVEALTYIRGRSIPDQ 359 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FIIIDEAQNL+RHEVKT+++R GEGSK++LMGDPEQIDHPYLD+ +NGL+Y+VE+FK Q Sbjct: 360 FIIIDEAQNLTRHEVKTLLTRVGEGSKIVLMGDPEQIDHPYLDSLNNGLAYVVERFKGQP 419 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 ISG + L KGERS LAQLAADLL Sbjct: 420 ISGSVKLLKGERSGLAQLAADLL 442 >ref|NP_657990.1| PhoH, PhoH-like protein [Bacillus anthracis A2012] Length = 442 Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/443 (59%), Positives = 336/443 (75%), Gaps = 1/443 (0%) Query: 13 MKKIFVLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDG 72 M KI+VLDTNVLL DP SIF+F+ +EVVIPAVVLEE+DSKKR DE+GRNAR VS+L+D Sbjct: 1 MDKIYVLDTNVLLQDPLSIFSFETNEVVIPAVVLEEVDSKKRYMDEVGRNARYVSKLIDK 60 Query: 73 LRELGHLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAE 132 RE+G LH + LE+GGT ++ELNHRSFV++Q++F E +NDNRILAVA N EE EK Sbjct: 61 FREIGKLHESIPLENGGTFRIELNHRSFVQLQDIFVEKTNDNRILAVAKNLSLEEQEKEN 120 Query: 133 PRPVVLVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRS 192 + V+LVSKDVLVR+KAD +G+ EDYLSDR ++ +Y+G+ + +D +Y Sbjct: 121 GKSVILVSKDVLVRVKADAIGLKAEDYLSDRVIEVENIYSGFLEGYISKEQLDYFYEKGE 180 Query: 193 LSVKQLALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQ 252 L + ++A ++P YP++FV+MKD +G SAL V+ +++ L N+ VWGI RN Q Sbjct: 181 LPLSEIA-NHPFYPNQFVVMKDALGGSSSALGIVDHLGKKVKKLIFHNEQVWGIRPRNVQ 239 Query: 253 QRMALELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDI 312 Q M LELLL +D PLV + ED YKKLL+ARP+VP+GKDI Sbjct: 240 QIMGLELLLREDSPLVTLTGKAGTGKTLLALASGLMQTEDLGLYKKLLVARPIVPVGKDI 299 Query: 313 GYLPGEKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQ 372 GYLPGEK+EKLRPWMQPI+DNLE+LF+TKK G++D IL G+GSI+VEALTYIRGRSIP Q Sbjct: 300 GYLPGEKEEKLRPWMQPIFDNLEYLFNTKKPGELDAILAGMGSIEVEALTYIRGRSIPDQ 359 Query: 373 FIIIDEAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQG 432 FIIIDEAQNL++HEVKTI++R GE SK++LMGDP+QIDHPYLD +NGL+Y+VEKFK+Q Sbjct: 360 FIIIDEAQNLTKHEVKTILTRVGEKSKIVLMGDPQQIDHPYLDEYNNGLTYVVEKFKEQR 419 Query: 433 ISGHITLEKGERSHLAQLAADLL 455 ISGH+ KGERS+LAQLAADLL Sbjct: 420 ISGHVKFVKGERSNLAQLAADLL 442 >ref|NP_846399.1| PhoH family protein [Bacillus anthracis str. Ames] gb|AAP27885.1| PhoH family protein [Bacillus anthracis str. Ames] Length = 437 Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/438 (59%), Positives = 332/438 (75%), Gaps = 1/438 (0%) Query: 18 VLDTNVLLHDPNSIFAFKEHEVVIPAVVLEEIDSKKRNADEIGRNARTVSRLLDGLRELG 77 +LDTNVLL DP SIF+F+ +EVVIPAVVLEE+DSKKR DE+GRNAR VS+L+D RE+G Sbjct: 1 MLDTNVLLQDPLSIFSFETNEVVIPAVVLEEVDSKKRYMDEVGRNARYVSKLIDKFREIG 60 Query: 78 HLHSGVVLEHGGTLKVELNHRSFVKVQEMFGEVSNDNRILAVALNYLHEENEKAEPRPVV 137 LH + LE+GGT ++ELNHRSFV++Q++F E +NDNRILAVA N EE EK + V+ Sbjct: 61 KLHESIPLENGGTFRIELNHRSFVQLQDIFVEKTNDNRILAVAKNLSLEEQEKENGKSVI 120 Query: 138 LVSKDVLVRIKADVLGITPEDYLSDRTGDLNELYAGYQSLMVHPSLIDEYYSHRSLSVKQ 197 LVSKDVLVR+KAD +G+ EDYLSDR ++ +Y+G+ + +D +Y L + + Sbjct: 121 LVSKDVLVRVKADAIGLKAEDYLSDRVIEVENIYSGFLEGYISKEQLDYFYEKGELPLSE 180 Query: 198 LALSYPLYPHEFVIMKDEIGTGKSALLKVNSDASRLEPLYLGNDAVWGISARNAQQRMAL 257 +A ++P YP++FV+MKD +G SAL V+ +++ L N+ VWGI RN QQ M L Sbjct: 181 IA-NHPFYPNQFVVMKDALGGSSSALGIVDHLGKKVKKLIFHNEQVWGIRPRNVQQIMGL 239 Query: 258 ELLLNDDIPLVXXXXXXXXXXXXXXXXXXXFKVEDEHKYKKLLIARPVVPMGKDIGYLPG 317 ELLL +D PLV + ED YKKLL+ARP+VP+GKDIGYLPG Sbjct: 240 ELLLREDSPLVTLTGKAGTGKTLLALASGLMQTEDLGLYKKLLVARPIVPVGKDIGYLPG 299 Query: 318 EKDEKLRPWMQPIYDNLEFLFDTKKSGDIDKILMGLGSIQVEALTYIRGRSIPSQFIIID 377 EK+EKLRPWMQPI+DNLE+LF+TKK G++D IL G+GSI+VEALTYIRGRSIP QFIIID Sbjct: 300 EKEEKLRPWMQPIFDNLEYLFNTKKPGELDAILAGMGSIEVEALTYIRGRSIPDQFIIID 359 Query: 378 EAQNLSRHEVKTIVSRAGEGSKVILMGDPEQIDHPYLDAASNGLSYIVEKFKQQGISGHI 437 EAQNL++HEVKTI++R GE SK++LMGDP+QIDHPYLD +NGL+Y+VEKFK+Q ISGH+ Sbjct: 360 EAQNLTKHEVKTILTRVGEKSKIVLMGDPQQIDHPYLDEYNNGLTYVVEKFKEQRISGHV 419 Query: 438 TLEKGERSHLAQLAADLL 455 KGERS+LAQLAADLL Sbjct: 420 KFVKGERSNLAQLAADLL 437 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 643,077,604 Number of extensions: 26266851 Number of successful extensions: 70597 Number of sequences better than 1.0e-05: 643 Number of HSP's gapped: 69780 Number of HSP's successfully gapped: 648 Length of query: 455 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 326 Effective length of database: 406,989,807 Effective search space: 132678677082 Effective search space used: 132678677082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)