BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0011.p (561 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390070.1| dihydroxy-acid dehydratase [Bacillus subtilis] ... 872 0.0 ref|NP_243928.1| dihydroxy-acid dehydratase [Bacillus halodurans... 788 0.0 ref|NP_655716.1| ILVD_EDD, Dehydratase family [Bacillus anthraci... 757 0.0 ref|NP_978253.1| dihydroxy-acid dehydratase [Bacillus cereus ATC... 754 0.0 ref|NP_831553.1| Dihydroxy-acid dehydratase [Bacillus cereus ATC... 750 0.0 >ref|NP_390070.1| dihydroxy-acid dehydratase [Bacillus subtilis] sp|P51785|ILVD_BACSU Dihydroxy-acid dehydratase (DAD) (Vegetative protein 110) (VEG110) pir||D69644 dihydroxy-acid dehydratase ilvD - Bacillus subtilis gb|AAA96629.1| dihydroxy-acid dehydratase [Bacillus subtilis] emb|CAB14105.1| dihydroxy-acid dehydratase [Bacillus subtilis subsp. subtilis str. 168] Length = 558 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/557 (76%), Positives = 482/557 (86%), Gaps = 1/557 (0%) Query: 5 KMRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKE 64 ++RS+MI +G DRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKE Sbjct: 3 ELRSNMITQGIDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKE 62 Query: 65 AIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVCIPNC 124 AIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADS+ETVVSAHWFDGMVCIPNC Sbjct: 63 AIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVSAHWFDGMVCIPNC 122 Query: 125 DKITPGMMMGALRVNIPTIFVSGGPMKAGVDSKGKKLSLTSVFEGVGAHQVGKINDDELL 184 DKITPGM+M A+R+NIPTIFVSGGPM AG S G+K+SL+SVFEGVGA+Q GKIN++EL Sbjct: 123 DKITPGMLMAAMRINIPTIFVSGGPMAAGRTSYGRKISLSSVFEGVGAYQAGKINENELQ 182 Query: 185 ELEQYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAEERKEFVRKSATQLMEL 244 ELEQ+GCPTCGSCSGMFTANSMNCL+EALGLALPGNGTILA + ERKEFVRKSA QLME Sbjct: 183 ELEQFGCPTCGSCSGMFTANSMNCLSEALGLALPGNGTILATSPERKEFVRKSAAQLMET 242 Query: 245 IKLDLKPRDIVTKESLDNAFALDMAMGGSTNTVLHTLALAQEAEIDYPLERINEVANRVP 304 I+ D+KPRDIVT +++DNAFALDMA+GGSTNTVLHTLALA EA ++Y LERINEVA RVP Sbjct: 243 IRKDIKPRDIVTVKAIDNAFALDMALGGSTNTVLHTLALANEAGVEYSLERINEVAERVP 302 Query: 305 YLSKLAPASDIFIEDVDRAGGVSAVLNELLKKPGAIFGDCMTVTGKTLAENVTGHEILDT 364 +L+KLAPASD+FIED+ AGGVSA LNEL KK GA+ D +TVTGKTL E + GHE+ D Sbjct: 303 HLAKLAPASDVFIEDLHEAGGVSAALNELSKKEGALHLDALTVTGKTLGETIAGHEVKDY 362 Query: 365 TVIHRLDNPYSEVGGLSVLYGNLAPEGSIIKVGAVDASVGGYHKGPAICFDSQEEALEGI 424 VIH LD P++E GGL+VL+GNLAP+G+IIK G V + H+GPA+ FDSQ+EAL+GI Sbjct: 363 DVIHPLDQPFTEKGGLAVLFGNLAPDGAIIKTGGVQNGI-TRHEGPAVVFDSQDEALDGI 421 Query: 425 ANGKVKEGHVVVIRYXXXXXXXXXXXXLAPTSQIVGMGLGAKVGLITDGRFSGASRGISI 484 N KVKEG VV+IRY LAPTSQIVGMGLG KV LITDGRFSGASRG+SI Sbjct: 422 INRKVKEGDVVIIRYEGPKGGPGMPEMLAPTSQIVGMGLGPKVALITDGRFSGASRGLSI 481 Query: 485 GHISPEAAEGGPIAFVENGDIIELDLNNRKIELLVDEEVLAVRRAGWKGFEPKVKTGYLA 544 GH+SPEAAEGGP+AFVENGD I +D+ R +++ V EE R+A WKGFEPKVKTGYLA Sbjct: 482 GHVSPEAAEGGPLAFVENGDHIIVDIEKRILDVQVPEEEWEKRKANWKGFEPKVKTGYLA 541 Query: 545 RYSKLVTNASKGGVLKI 561 RYSKLVT+A+ GG++KI Sbjct: 542 RYSKLVTSANTGGIMKI 558 >ref|NP_243928.1| dihydroxy-acid dehydratase [Bacillus halodurans] sp|Q9K8E4|ILVD_BACHD Dihydroxy-acid dehydratase (DAD) pir||F84032 dihydroxy-acid dehydratase ilvD [imported] - Bacillus halodurans (strain C-125) dbj|BAB06781.1| dihydroxy-acid dehydratase [Bacillus halodurans] Length = 555 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/556 (68%), Positives = 452/556 (81%), Gaps = 1/556 (0%) Query: 6 MRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKEA 65 MRSDMIKKG DRAPHRSLLRAAGVKEE+ KPFI VCNSYIDI+PGH+HL +F ++ KEA Sbjct: 1 MRSDMIKKGIDRAPHRSLLRAAGVKEEEMDKPFIGVCNSYIDIIPGHMHLNKFAEVAKEA 60 Query: 66 IREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVCIPNCD 125 IREAGG+PFEFNTIGVDDGIAMGHIGMRYSLPSREII D+ ETV++AHWFDG+ IPNCD Sbjct: 61 IREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSREIICDAAETVINAHWFDGVFFIPNCD 120 Query: 126 KITPGMMMGALRVNIPTIFVSGGPMKAGVDSKGKKLSLTSVFEGVGAHQVGKINDDELLE 185 KITPGM+M ++R N+P++FVSGGPM+AG GK LSL SVFEGVGA GK+ +ELLE Sbjct: 121 KITPGMLMASVRTNVPSVFVSGGPMEAGRTKDGKNLSLASVFEGVGAFSSGKMTREELLE 180 Query: 186 LEQYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAEERKEFVRKSATQLMELI 245 +EQ CPTCGSCSGMFTANSMN L E LG+ALPGNGTI+A +E R + ++ +A LM LI Sbjct: 181 IEQTACPTCGSCSGMFTANSMNSLMEMLGMALPGNGTIVATSEARHQLIKDAAKHLMNLI 240 Query: 246 KLDLKPRDIVTKESLDNAFALDMAMGGSTNTVLHTLALAQEAEIDYPLERINEVANRVPY 305 + D++PRDI+TKE++D+AFALDMAMGGSTNTVLHTLA+A EAEI+Y L RINEVA RVPY Sbjct: 241 EKDIRPRDIITKETIDDAFALDMAMGGSTNTVLHTLAIANEAEIEYDLNRINEVAERVPY 300 Query: 306 LSKLAPASDIFIEDVDRAGGVSAVLNELLKKPGAIFGDCMTVTGKTLAENVTGHEILDTT 365 L K++PASD ++DV AGGV+A++ EL + GAI D +T+TGK++ ENV EI D Sbjct: 301 LCKISPASDYSMDDVHHAGGVAAIIKELCEIDGAIHPDRITITGKSIYENVKDAEITDDV 360 Query: 366 VIHRLDNPYSEVGGLSVLYGNLAPEGSIIKVGAVDASVGGYHKGPAICFDSQEEALEGIA 425 VI R DNPYS VGGLS+L+GNLAP G++IKVGAVD S+ + +G AI ++SQEEA +GI Sbjct: 361 VIRRKDNPYSPVGGLSILFGNLAPNGAVIKVGAVDPSIQIF-EGEAIVYNSQEEAQQGIN 419 Query: 426 NGKVKEGHVVVIRYXXXXXXXXXXXXLAPTSQIVGMGLGAKVGLITDGRFSGASRGISIG 485 NG V+EGHVVVIRY LAPTS I+G GLG KV LITDGRFSGASRGISIG Sbjct: 420 NGDVREGHVVVIRYEGPKGGPGMPEMLAPTSAIIGRGLGTKVALITDGRFSGASRGISIG 479 Query: 486 HISPEAAEGGPIAFVENGDIIELDLNNRKIELLVDEEVLAVRRAGWKGFEPKVKTGYLAR 545 HISPEAAEGGPIAF+ENGD I +DL NR IE LV +E +A R+ GW EPKVK GYLAR Sbjct: 480 HISPEAAEGGPIAFIENGDKIRIDLPNRTIEWLVSDEEIAKRQEGWTEPEPKVKKGYLAR 539 Query: 546 YSKLVTNASKGGVLKI 561 YSKLVT+A+ GGV+KI Sbjct: 540 YSKLVTSANTGGVMKI 555 >ref|NP_655716.1| ILVD_EDD, Dehydratase family [Bacillus anthracis A2012] ref|NP_844270.1| dihydroxy-acid dehydratase [Bacillus anthracis str. Ames] sp|Q81S26|ILVD_BACAA Dihydroxy-acid dehydratase (DAD) gb|AAP25756.1| dihydroxy-acid dehydratase [Bacillus anthracis str. Ames] Length = 557 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/556 (65%), Positives = 451/556 (81%), Gaps = 3/556 (0%) Query: 6 MRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKEA 65 MRSDMIKKGFD+APHRSLL+A G+K+EDF KPFIA+CNS+I+I+PGH HL EFGK+VKEA Sbjct: 1 MRSDMIKKGFDKAPHRSLLKATGLKDEDFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEA 60 Query: 66 IREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVCIPNCD 125 +R AG VPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADS+ETVV+AHWFDGM+CIPNCD Sbjct: 61 VRAAGMVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMICIPNCD 120 Query: 126 KITPGMMMGALRVNIPTIFVSGGPMKAGVDSKGKKLSLTSVFEGVGAHQVGKINDDELLE 185 KITPGMMM ALR+NIPT+FVSGGPM AG SKG + L+SVFEGVGA+Q GKI+++EL + Sbjct: 121 KITPGMMMAALRINIPTVFVSGGPMAAGKTSKGDVVDLSSVFEGVGAYQSGKISEEELKD 180 Query: 186 LEQYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAEERKEFVRKSATQLMELI 245 +E +GCP+CGSCSGMFTANSMNCL E LGLALPGNG+ILA+ R+E ++++A +L LI Sbjct: 181 IEDHGCPSCGSCSGMFTANSMNCLCEVLGLALPGNGSILAIDPRREELIKQAAEKLKILI 240 Query: 246 KLDLKPRDIVTKESLDNAFALDMAMGGSTNTVLHTLALAQEAEIDYPLERINEVANRVPY 305 + D+KPRDIVT+E++D+AFALDMAMGGSTNTVLHTLALAQEA +DY + RI+ V+ RVP+ Sbjct: 241 ERDIKPRDIVTEEAIDDAFALDMAMGGSTNTVLHTLALAQEAGLDYDMNRIDAVSRRVPH 300 Query: 306 LSKLAPASDIFIEDVDRAGGVSAVLNELLKKPGAIFGDCMTVTGKTLAENVTGHEILDTT 365 L K++PAS+ +ED+DRAGG+SA+L E+ +K G + D +T TG+TL EN+ EI D Sbjct: 301 LCKVSPASNWHMEDIDRAGGISAILKEMSRKEGVLHLDRITATGQTLRENIAHAEIKDKE 360 Query: 366 VIHRLDNPYSEVGGLSVLYGNLAPEGSIIKVGAVDASVGGYHKGPAICFDSQEEALEGIA 425 VIH L+NP+SE GGL +L GNLA +G++IK GA + +GP + F+SQ+EAL GI Sbjct: 361 VIHSLENPHSEEGGLRILKGNLAKDGAVIKSGATEVK---RFEGPCVIFNSQDEALAGIM 417 Query: 426 NGKVKEGHVVVIRYXXXXXXXXXXXXLAPTSQIVGMGLGAKVGLITDGRFSGASRGISIG 485 GKVK+G VVVIRY LAPTS I GMGLGA V L+TDGRFSGASRGIS+G Sbjct: 418 LGKVKKGDVVVIRYEGPRGGPGMPEMLAPTSAIAGMGLGADVALLTDGRFSGASRGISVG 477 Query: 486 HISPEAAEGGPIAFVENGDIIELDLNNRKIELLVDEEVLAVRRAGWKGFEPKVKTGYLAR 545 HISPEAA GG IA +E GDI+ +D+ R +E+ V +E L R+ WK EPKVKTG+L R Sbjct: 478 HISPEAAAGGTIALLEQGDIVCIDVEERLLEVRVSDEELGKRKKEWKRPEPKVKTGWLGR 537 Query: 546 YSKLVTNASKGGVLKI 561 Y+++VT+A+ G VLKI Sbjct: 538 YAQMVTSANTGAVLKI 553 >ref|NP_978253.1| dihydroxy-acid dehydratase [Bacillus cereus ATCC 10987] gb|AAS40861.1| dihydroxy-acid dehydratase [Bacillus cereus ATCC 10987] Length = 557 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/556 (65%), Positives = 451/556 (81%), Gaps = 3/556 (0%) Query: 6 MRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKEA 65 MRSDMIKKGFD+APHRSLL+A G+K+EDF KPFIA+CNS+I+I+PGH HL EFGK+VKEA Sbjct: 1 MRSDMIKKGFDKAPHRSLLKATGLKDEDFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEA 60 Query: 66 IREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVCIPNCD 125 +R AG VPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADS+ETVV+AHWFDGM+CIPNCD Sbjct: 61 VRAAGMVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMICIPNCD 120 Query: 126 KITPGMMMGALRVNIPTIFVSGGPMKAGVDSKGKKLSLTSVFEGVGAHQVGKINDDELLE 185 KITPGMMM ALR+NIPT+FVSGGPM AG SKG+ + L+SVFEGVGA+Q GKI+++EL + Sbjct: 121 KITPGMMMAALRINIPTVFVSGGPMAAGKTSKGEVVDLSSVFEGVGAYQSGKISEEELKD 180 Query: 186 LEQYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAEERKEFVRKSATQLMELI 245 +E +GCP+CGSCSGMFTANSMNCL E LGLALPGNG+ILA+ R+E ++++A +L LI Sbjct: 181 IEDHGCPSCGSCSGMFTANSMNCLCEVLGLALPGNGSILAIDPRREELIKQAAEKLKILI 240 Query: 246 KLDLKPRDIVTKESLDNAFALDMAMGGSTNTVLHTLALAQEAEIDYPLERINEVANRVPY 305 + D+KPRDIVT+E++D+AFALDMAMGGSTNTVLHTLALA EA +DY + RI+ V+ RVP+ Sbjct: 241 ERDIKPRDIVTEEAIDDAFALDMAMGGSTNTVLHTLALAHEAGLDYDMSRIDAVSRRVPH 300 Query: 306 LSKLAPASDIFIEDVDRAGGVSAVLNELLKKPGAIFGDCMTVTGKTLAENVTGHEILDTT 365 L K++PAS+ +ED+DRAGG+SA+L E+ +K G + D +T TG+TL EN+ EI D Sbjct: 301 LCKVSPASNWHMEDIDRAGGISAILKEMSRKEGVLHLDRITATGQTLRENIAHAEIKDKE 360 Query: 366 VIHRLDNPYSEVGGLSVLYGNLAPEGSIIKVGAVDASVGGYHKGPAICFDSQEEALEGIA 425 VIH L+NP+SE GGL +L GNLA +G++IK GA + +GP + F+SQ+EAL GI Sbjct: 361 VIHSLENPHSEEGGLRILKGNLAKDGAVIKSGATEVK---RFEGPCVIFNSQDEALAGIM 417 Query: 426 NGKVKEGHVVVIRYXXXXXXXXXXXXLAPTSQIVGMGLGAKVGLITDGRFSGASRGISIG 485 GKVK+G VVVIRY LAPTS I GMGLGA V L+TDGRFSGASRGIS+G Sbjct: 418 LGKVKKGDVVVIRYEGPRGGPGMPEMLAPTSAIAGMGLGADVALLTDGRFSGASRGISVG 477 Query: 486 HISPEAAEGGPIAFVENGDIIELDLNNRKIELLVDEEVLAVRRAGWKGFEPKVKTGYLAR 545 HISPEAA GG IA +E GDI+ +D+ R +E+ V +E L R+ WK EPKVKTG+L R Sbjct: 478 HISPEAAAGGTIALLEQGDIVCIDVEERLLEVRVSDEELDKRKKEWKRPEPKVKTGWLGR 537 Query: 546 YSKLVTNASKGGVLKI 561 Y+++VT+A+ G VLK+ Sbjct: 538 YAQMVTSANTGAVLKV 553 >ref|NP_831553.1| Dihydroxy-acid dehydratase [Bacillus cereus ATCC 14579] sp|Q81F26|ILVD_BACCR Dihydroxy-acid dehydratase (DAD) gb|AAP08754.1| Dihydroxy-acid dehydratase [Bacillus cereus ATCC 14579] Length = 553 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/552 (65%), Positives = 449/552 (81%), Gaps = 3/552 (0%) Query: 10 MIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKEAIREA 69 MIKKGFD+APHRSLL+A G+K+EDF KPFIA+CNS+I+I+PGH HL EFGK+VKEA+R A Sbjct: 1 MIKKGFDKAPHRSLLKATGLKDEDFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAA 60 Query: 70 GGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSLETVVSAHWFDGMVCIPNCDKITP 129 G VPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADS+ETVV+AHWFDGM+CIPNCDKITP Sbjct: 61 GMVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVVNAHWFDGMICIPNCDKITP 120 Query: 130 GMMMGALRVNIPTIFVSGGPMKAGVDSKGKKLSLTSVFEGVGAHQVGKINDDELLELEQY 189 GMMM ALR+NIPT+FVSGGPM AG SKG+ + L+SVFEGVGA+Q GKI+++EL ++E + Sbjct: 121 GMMMAALRINIPTVFVSGGPMAAGKTSKGEVVDLSSVFEGVGAYQSGKISEEELKDIEDH 180 Query: 190 GCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAEERKEFVRKSATQLMELIKLDL 249 GCP+CGSCSGMFTANSMNCL E LGLALPGNG+ILA+ R+E ++++A +L LI+ D+ Sbjct: 181 GCPSCGSCSGMFTANSMNCLCEVLGLALPGNGSILAIDPRREELIKQAAEKLKILIERDI 240 Query: 250 KPRDIVTKESLDNAFALDMAMGGSTNTVLHTLALAQEAEIDYPLERINEVANRVPYLSKL 309 KPRDIVT+E++D+AFALDMAMGGSTNTVLHTLALAQEA +DY + RI+ V+ RVP+L K+ Sbjct: 241 KPRDIVTEEAIDDAFALDMAMGGSTNTVLHTLALAQEAGLDYDMNRIDAVSRRVPHLCKV 300 Query: 310 APASDIFIEDVDRAGGVSAVLNELLKKPGAIFGDCMTVTGKTLAENVTGHEILDTTVIHR 369 +PAS+ +ED+DRAGG+SA+L E+ +K G + D +T TG+TL EN+ EI D VIH Sbjct: 301 SPASNWHMEDIDRAGGISAILKEMSRKEGVLHLDRITATGQTLRENIAEAEIKDKEVIHS 360 Query: 370 LDNPYSEVGGLSVLYGNLAPEGSIIKVGAVDASVGGYHKGPAICFDSQEEALEGIANGKV 429 L+NP+SE GGL +L GNLA +G++IK GA + +GP + F+SQ+EAL GI GKV Sbjct: 361 LENPHSEEGGLRILKGNLAKDGAVIKSGATEVK---RFEGPCVIFNSQDEALAGIMLGKV 417 Query: 430 KEGHVVVIRYXXXXXXXXXXXXLAPTSQIVGMGLGAKVGLITDGRFSGASRGISIGHISP 489 K+G VVVIRY LAPTS I GMGLGA+V L+TDGRFSGASRGIS+GHISP Sbjct: 418 KKGDVVVIRYEGPRGGPGMPEMLAPTSAIAGMGLGAEVALLTDGRFSGASRGISVGHISP 477 Query: 490 EAAEGGPIAFVENGDIIELDLNNRKIELLVDEEVLAVRRAGWKGFEPKVKTGYLARYSKL 549 EAA GG IA +E GDI+ +D+ R +E+ V +E L R+ WK EPKVKTG+L RY+++ Sbjct: 478 EAAAGGMIALLEQGDIVCIDVEERLLEVRVSDEELEKRKKEWKRPEPKVKTGWLGRYAQM 537 Query: 550 VTNASKGGVLKI 561 VT+A+ G VLKI Sbjct: 538 VTSANTGAVLKI 549 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 821,746,459 Number of extensions: 34778046 Number of successful extensions: 90166 Number of sequences better than 1.0e-05: 1392 Number of HSP's gapped: 86938 Number of HSP's successfully gapped: 1485 Length of query: 561 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 430 Effective length of database: 401,559,609 Effective search space: 172670631870 Effective search space used: 172670631870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)