BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0171.0002.p
         (53 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_471950.1| UDP-glucose 4-epimerase [Listeria innocua] >gi|...    79   2e-14
gb|AAF25549.1| GalE [Staphylococcus carnosus]                          79   4e-14
ref|NP_466000.1| UDP-glucose 4-epimerase [Listeria monocytogenes...    76   2e-13
ref|NP_965565.1| UDP-glucose 4-epimerase [Lactobacillus johnsoni...    75   3e-13
ref|ZP_00064196.1| COG1087: UDP-glucose 4-epimerase [Leuconostoc...    75   6e-13

>ref|NP_471950.1| UDP-glucose 4-epimerase [Listeria innocua]
 pir||AG1759 UDP-glucose 4-epimerase [imported] - Listeria innocua  (strain
           Clip11262)
 emb|CAC97847.1| UDP-glucose 4-epimerase [Listeria innocua]
          Length = 328

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 38/47 (80%)

Query: 5   RRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           RRAGDP  LVASSDKAR +LGW P + DV+DII +AWNWH ++P GY
Sbjct: 282 RRAGDPGTLVASSDKAREILGWQPTYTDVKDIIATAWNWHVSHPNGY 328


>gb|AAF25549.1| GalE [Staphylococcus carnosus]
          Length = 329

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 42/50 (84%)

Query: 2   IQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           I ERRAGDP+ LVASSDKA+ VLGW P+H D+ +II++AWNWH ++P GY
Sbjct: 278 IGERRAGDPSKLVASSDKAQRVLGWKPKHDDIHEIIETAWNWHQSHPNGY 327


>ref|NP_466000.1| UDP-glucose 4-epimerase [Listeria monocytogenes EGD-e]
 pir||AE1384 UDP-glucose 4-epimerase [imported] - Listeria monocytogenes
           (strain EGD-e)
 emb|CAD00555.1| UDP-glucose 4-epimerase [Listeria monocytogenes]
          Length = 327

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 5   RRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           RRAGDP  L+ASSDKAR +LGW P + DV+DII +AW WH ++P GY
Sbjct: 281 RRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY 327


>ref|NP_965565.1| UDP-glucose 4-epimerase [Lactobacillus johnsonii NCC 533]
 gb|AAS09531.1| UDP-glucose 4-epimerase [Lactobacillus johnsonii NCC 533]
          Length = 330

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 38/50 (76%)

Query: 2   IQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           I  RR GDP  LVA S KAR VLGW P+H DV+D+I +AWNWH ++P+GY
Sbjct: 278 IGARRGGDPDSLVADSSKARKVLGWKPKHEDVDDVIATAWNWHKSHPKGY 327


>ref|ZP_00064196.1| COG1087: UDP-glucose 4-epimerase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 351

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 2   IQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGYGE 53
           I  RRAGDP +L+A+SDKAR VLGW P++ +V+DII++AWNWH  +P GY +
Sbjct: 299 IGPRRAGDPDILIANSDKARDVLGWAPKYDNVQDIIKTAWNWHKNHPSGYND 350


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.128    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 84,033,671
Number of extensions: 2214755
Number of successful extensions: 5150
Number of sequences better than 1.0e-05: 106
Number of HSP's gapped: 5281
Number of HSP's successfully gapped: 106
Length of query: 53
Length of database: 757,237,578
Length adjustment: 26
Effective length of query: 27
Effective length of database: 686,645,004
Effective search space: 18539415108
Effective search space used: 18539415108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)