BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0023.p (360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00092554.1| COG0791: Cell wall-associated hydrolases (inv... 79 1e-13 ref|ZP_00085381.1| COG0791: Cell wall-associated hydrolases (inv... 77 5e-13 ref|NP_743826.1| NLP/P60 family protein [Pseudomonas putida KT24... 76 1e-12 ref|NP_743827.1| lipoprotein, putative [Pseudomonas putida KT244... 75 2e-12 ref|ZP_00138795.1| COG0791: Cell wall-associated hydrolases (inv... 74 7e-12 >ref|ZP_00092554.1| COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Azotobacter vinelandii] Length = 260 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 18/132 (13%) Query: 217 VIESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQ 276 + +S++ G G LGTPY +G S S + FDCS FI +F + A +KLP +R + I Sbjct: 113 LADSILVRGFGLLGTPYRYGGS-SAVTGFDCSGFIGYLFREEAGIKLPRSTR---EMITL 168 Query: 277 NSTVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVAS 336 ++ V + L+ GDL+FF + + ++ HV +Y+G+G+ L + S S Sbjct: 169 DAPRVAR-NELQAGDLIFFNN-------------RGRGQVNHVGVYIGNGRFLHSASRRS 214 Query: 337 GGVRVDKLSASW 348 GGVRVD L S+ Sbjct: 215 GGVRVDSLQNSY 226 >ref|ZP_00085381.1| COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Pseudomonas fluorescens PfO-1] Length = 226 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 19/136 (13%) Query: 219 ESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNS 278 +S++ GM +GT Y FG + + FDCS FI +F + A + LP +R + I ++ Sbjct: 92 DSILERGMSLIGTRYRFGGT--SEAGFDCSGFIGYLFREEAGMNLPRSTR---EMINVDA 146 Query: 279 TVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVASGG 338 +V+ S L+ GDL+FF + R++H +YLGD Q + + S SGG Sbjct: 147 PLVSR-SNLEPGDLLFF------------ATNGRRGRVSHAGIYLGDNQFIHSSSRRSGG 193 Query: 339 VRVDKLSAS-WMKRFL 353 VR+D L S W K F+ Sbjct: 194 VRIDSLGDSYWSKTFI 209 >ref|NP_743826.1| NLP/P60 family protein [Pseudomonas putida KT2440] gb|AAN67290.1| NLP/P60 family protein [Pseudomonas putida KT2440] Length = 214 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 19/138 (13%) Query: 217 VIESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQ 276 + +S++ GM +GT Y FG + S+ S FDCS FI +F + A + LP +R+ I Sbjct: 79 LADSILERGMSLIGTRYRFGGT-SEKSGFDCSGFIGYLFREEAGMTLPRSTRE---MINV 134 Query: 277 NSTVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVAS 336 ++ V + LK GDL+FF R++H +YLGD Q + + S S Sbjct: 135 DAPKVAR-NKLKPGDLLFFST-------------NGRGRVSHAGIYLGDNQFIHSSSRRS 180 Query: 337 GGVRVDKLSAS-WMKRFL 353 GGVR+D L W K F+ Sbjct: 181 GGVRIDSLGDRYWSKTFI 198 >ref|NP_743827.1| lipoprotein, putative [Pseudomonas putida KT2440] gb|AAN67291.1| lipoprotein, putative [Pseudomonas putida KT2440] Length = 177 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 20/144 (13%) Query: 217 VIESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQ 276 + + V+ +G +GTPY +G + D S FDCS I+ ++ DAA + LP +R+ + + Sbjct: 44 IADDVLIRAIGLVGTPYRWGGNTPD-SGFDCSGLIKYVYRDAAGISLPRSTREM--IVMR 100 Query: 277 NSTVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVAS 336 TV D S L+ GDL+FF GS +++H +Y+GDG+ + S Sbjct: 101 APTV--DASSLQSGDLVFFATSGGS-------------QVSHAGIYVGDGRFVHAPSTG- 144 Query: 337 GGVRVDKLSAS-WMKRFLYGGSVI 359 G VR+D LS S W K +L VI Sbjct: 145 GTVRLDYLSNSYWAKAYLQAKRVI 168 >ref|ZP_00138795.1| COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Pseudomonas aeruginosa UCBPP-PA14] Length = 193 Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 19/129 (14%) Query: 220 SVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNST 279 S++ +GTPY FG + + FDCS F+ +F + A +KLP +R+ I + Sbjct: 60 SILERAFELIGTPYRFGGTTA--KGFDCSGFVGYLFREEAGIKLPRSTRE---LIDMDVP 114 Query: 280 VVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVASGGV 339 +V+ L+ GDL+FF + + R++H +Y+GDGQ + + S GGV Sbjct: 115 LVSK-DELQPGDLLFFNN-------------RGRGRVSHAGIYIGDGQFIHSASRRGGGV 160 Query: 340 RVDKLSASW 348 RVD L +S+ Sbjct: 161 RVDSLDSSY 169 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 423,348,754 Number of extensions: 15403777 Number of successful extensions: 42475 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 42830 Number of HSP's successfully gapped: 73 Length of query: 360 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 233 Effective length of database: 412,420,005 Effective search space: 96093861165 Effective search space used: 96093861165 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)