BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0016.p (1222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00161520.1| hypothetical protein Avar163801 [Anabaena var... 863 0.0 ref|NP_485923.1| two-component hybrid sensor and regulator [Nost... 829 0.0 ref|NP_923581.1| two-component hybrid sensor and regulator [Gloe... 794 0.0 ref|NP_762343.1| Signal transduction histidine kinase [Vibrio vu... 785 0.0 ref|NP_936989.1| signal transduction histidine kinase [Vibrio vu... 785 0.0 >ref|ZP_00161520.1| hypothetical protein Avar163801 [Anabaena variabilis ATCC 29413] Length = 1917 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/1002 (45%), Positives = 625/1002 (62%), Gaps = 53/1002 (5%) Query: 231 RRIKVTSKDEIGEVARVFQNMAGDLEQKQEMEKAYAQAQSDQAWLNANIARVTELLRGVS 290 R I V ++ E+ + M +L + Q ++Q WL N+A+ T +L+G Sbjct: 957 RSIAVEAQGEVAILKDNINQMIANLRE-------TTQKNTEQDWLKTNLAKFTRMLQGQR 1009 Query: 291 SLEQVSQTFISEFTPVLGAEYGAIYL----KDQNHPNLLSSSAYYAGEAGGKPKDSFEIG 346 LE VS+ +SE P++GA++G YL ++Q++ LLS+ AY + + F++G Sbjct: 1010 DLETVSKLILSELAPLVGAQHGVFYLMEGAENQSYLQLLSTYAYRERK---HLANRFQLG 1066 Query: 347 QGLVGQSALDKKPIKLANAPEDYVSVTSGFGGSHPDHILIYPVLFEDELMGVVEFASFTP 406 +GLVGQ AL+K+ I L P DYV ++SG G ++P + ++ PVLFE ++ V+E ASF Sbjct: 1067 EGLVGQCALEKERILLTEVPSDYVKISSGLGEANPLNAVVLPVLFEGQVTAVIELASFRR 1126 Query: 407 LSNLQNELLHQLANNLGVILNNISRRLVVEELLRESQAXXXXXXXXXXXXXXXXXXXXXX 466 S + QL ++ ++LN I+ + EELL++SQ+ Sbjct: 1127 FSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAEELQTQQSELRETNKRLEQQ 1186 Query: 467 XXXXXXXTDAXXXXXXXXXXXXXXXXHYNTELVAKTRALEDQVQEVEEKKDEIEQARRQL 526 D N EL K L Q +EVE K EIEQARR L Sbjct: 1187 AQSLKASED-------LLRGQQEELQQTNAELEEKAELLAIQKKEVERKNREIEQARRSL 1239 Query: 527 EKQAMQLAVTSKYKSEFLANMSHELRTPXXXXXXXXXXXTENKEGNLTEKQVEFAHTIYM 586 E++A QLA++S+YKSEFLANMSHELRTP T+N +GNLT KQVE++ TIY Sbjct: 1240 EEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDGNLTAKQVEYSQTIYS 1299 Query: 587 SGADLLKMIDEILDLSKVDAGKMELNYEEIPLTDLKTFVKQNFAPQAAKKGLSLRLLFDE 646 +G +LL +I++ILDL+K+++G M ++ IPL++L +++ F A KGL+ + Sbjct: 1300 AGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQVAQNKGLTFAVELAP 1359 Query: 647 PLPDAIYTDSHRLKQILRNLLSNAFKFTSEGFVEFSVSAA----DKEQLPAFLPHEYNYI 702 LP + TD RL+Q+L+NLLSNAFKFT G V + A + Q P L N I Sbjct: 1360 ELPTTVNTDIKRLQQVLKNLLSNAFKFTERGEVRLKIEVAKPGWNSNQQP--LNSAQNVI 1417 Query: 703 ALSVKDSGIGIPADKTDIVFEAFQQVDGTTSRKYGGTGLGLSISRELARLMGGAIGLDSR 762 A +V D+GIGI ADK I+FEAFQQ DGTTSRKYGGTGLGLSISRE+A L+GG I L S Sbjct: 1418 AFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIKLTSY 1477 Query: 763 EGQGSIFTLYLPVKGQYSLLPGXXXXXXXXXXXXXPDYDSGRGEDYTQEASPAPLESVVV 822 GQGS FT YLP Q+S YDS ++ Sbjct: 1478 PGQGSTFTFYLP---QFS--AESTLTQADAINRVSTKYDS------------------IL 1514 Query: 823 EDDREDL---SSKDKVLLIIEDDEKFARILLDMARSRGFKGLVALQGDTGLNMATTYLPD 879 DDR ++ S+ + +LLIIEDD FARIL+DMAR GF+ L A G GL +A + P Sbjct: 1515 VDDRTNITNSSADNNILLIIEDDVNFARILVDMARQHGFQVLSAQTGTAGLKLAKDFQPM 1574 Query: 880 AIILDIQLPVMDGWAILRELKGSSQTRHIPVHVISVNDEVKQGLMMGAMAYLRKPSTREA 939 AI+LDI+LP MDGW +L LK TRHIPVH+++V + ++GL +GA+AYL+KP T EA Sbjct: 1575 AILLDIRLPEMDGWTVLDRLKHDPTTRHIPVHIMTVEEGRQRGLQLGAIAYLQKPVTSEA 1634 Query: 940 LERAFSQIESYTASTLKHLLVVEDDDIQRRSIMELIGHDDVAITAVSTGHEALAELRKQK 999 + A +I + +K+LLVVEDD++QR+SI+ELIG+ DVA AV TG AL +R Q+ Sbjct: 1635 ISEALDKIRGFVERRVKNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQQ 1694 Query: 1000 YDCXXXXXXXXXXTGFELLDQIRDDEELNDLPIIIYTGKDLDNKEETRLRKYAESIIIKD 1059 +DC TGFEL++QI+ + LPII+YTG+++ +ET LR+ AE+II+KD Sbjct: 1695 FDCLVLDLGLPDMTGFELMEQIKREANGATLPIIVYTGREISKTQETELRRIAETIIVKD 1754 Query: 1060 VRSPERLLDETTLFLHRVEANLPEDKRKILQKLHNKEELFDGKKILLVDDDIRNVFALSS 1119 VRSPERLLDET LFLHRV+ANLP KR+IL++LH+++ GKK+L+VDDD+RN+FAL+S Sbjct: 1755 VRSPERLLDETALFLHRVQANLPTPKREILEQLHSQDYSLVGKKVLIVDDDVRNIFALTS 1814 Query: 1120 VLEGYHMEVKFAENGREALDMLVEQEDFDLVLMDMMMPEMDGYEAMRRIRQMPQYQKLPI 1179 +LE Y M+V +AENGRE + +L +D D+VLMD+MMPEMDGYE M+ IR+ Q++ LPI Sbjct: 1815 MLERYQMQVIYAENGREGISLLENTQDIDVVLMDVMMPEMDGYETMQLIRKKEQFRALPI 1874 Query: 1180 IALTAKAMKEDRAKCIEAGASDYMKKPISTEQLLSLMRVWLY 1221 IALTAKAM+ DR +CI AGASDY+ KP+ TEQLLSL+RVWLY Sbjct: 1875 IALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWLY 1916 >ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] pir||AE2041 two-component hybrid sensor and regulator alr1883 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1194 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/1241 (39%), Positives = 699/1241 (56%), Gaps = 72/1241 (5%) Query: 1 MKIKAKLLIGFSAILAIMLALTFIGYDRLNYMSSQLDSFQDRYSKGRSSSGLRGEVNDMA 60 +KI +K+ GF+ + I+ + FI Y + + + K R + + ++ D+ Sbjct: 5 LKIGSKIGAGFTISITILSTIGFISYQSIQELIAA-------SRKERHTYQVLRQIADLN 57 Query: 61 RILTTSMLNADQLSVDSQKNEIEAKVKKAEGYLKAIEESTETAEEMQLLTRIKAAYTAYM 120 +L+T+ + I +++ E Y KA + +E+Q LT Y+ Sbjct: 58 SLLSTA-------ESGQRGYIITGEMRYLEPYQKATKSLDIRVKELQKLTSDNPQQHGYI 110 Query: 121 T-----------YQNKALDMLSAGYFQNAN-AYRNSEGQKIQNEVLD---SLNA----LS 161 + LD+ A F+ A + + G+ + ++ + +NA L Sbjct: 111 SRLEPLINERRAVMQTVLDLRQAQGFEAAQKSILSDRGRAVMAQIRNISQQMNAEELKLL 170 Query: 162 DYNAFRMTEENNNAQAAYERSIQMVTLIMIXXXXXXXXXXXWVIPSITRGLNVVSMMIKS 221 + NN A SI +V+ I+ + I+ L +S + Sbjct: 171 EQRTAMAQNAANNTLATITYSIPLVSFIL-------ALIGYLLTRHISFPLQQISHAAER 223 Query: 222 FGNGKMRAIRRIKVTSKDEIGEVARVFQNMAGDLEQKQEMEKAYAQAQSDQAWLNANIAR 281 +G + A+ +DEIG + R F M +L Q +Q WL +N+A Sbjct: 224 MSSGDL-AVTLPNSIRQDEIGILTRTFNQMVANL-------SITTQKNEEQNWLKSNLAE 275 Query: 282 VTELLRGVSSLEQVSQTFISEFTPVLGAEYGAIYLKDQNHPNL-LSSSAYYAGEAGGKPK 340 T+LL+G +LE +S +S+ TP++ ++ Y+ D+ H + L YA Sbjct: 276 FTQLLQGQRNLESMSSLILSKLTPLVESQQSVFYVIDRTHDEVTLKLIGSYAYNERRHLN 335 Query: 341 DSFEIGQGLVGQSALDKKPIKLANAPEDYVSVTSGFGGSHPDHILIYPVLFEDELMGVVE 400 + +G+GLVGQ AL+K+ I L P DY+ ++SG G + P +I++ PVLFE E++ V+E Sbjct: 336 NFVRLGEGLVGQCALEKQRILLTEVPSDYIRISSGLGAALPLNIIVLPVLFETEVIAVIE 395 Query: 401 FASFTPLSNLQNELLHQLANNLGVILNNISRRLVVEELLRESQAXXXXXXXXXXXXXXXX 460 ASF S L + Q + +GV LN+I + LL ES A Sbjct: 396 IASFHRFSQLHLTFIDQFSEVIGVFLNSIYASAQTQNLLDESVALAAELRQSNQLLEQQT 455 Query: 461 XXXXXXXXXXXXXTDAXXXXXXXXXXXXXXXXHYNTELVAKTRALEDQVQEVEEKKDEIE 520 L + + + QE+E Sbjct: 456 QDLENSEFLLKQQQQELQQSNEELQQLNEELEEKAELLELQNNEVARKNQEIE------- 508 Query: 521 QARRQLEKQAMQLAVTSKYKSEFLANMSHELRTPXXXXXXXXXXXTENKEGNLTEKQVEF 580 +AR+ +E++A QLA++S+YKSEFLANMSHELRTP +N GNL+ KQVE+ Sbjct: 509 KARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADNSSGNLSNKQVEY 568 Query: 581 AHTIYMSGADLLKMIDEILDLSKVDAGKMELNYEEIPLTDLKTFVKQNFAPQAAKKGLSL 640 + TIY +G DLL++I++ILDL+K+++G + + E I DL ++K+ F A KGLS Sbjct: 569 SQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKRTFQQVAQDKGLSF 628 Query: 641 RLLFDEPLPDAIYTDSHRLKQILRNLLSNAFKFTSEGFVEFSVSAADKEQLPAFLPHEYN 700 + DE LP I +D RL+QIL+NLL+NAFKFT +G V + +Q+ P Sbjct: 629 SIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGGVNLRIGL---DQINTNHP---- 681 Query: 701 YIALSVKDSGIGIPADKTDIVFEAFQQVDGTTSRKYGGTGLGLSISRELARLMGGAIGLD 760 I ++ D+GIGIP +K I+FEAFQQVDGTTSRKYGGTGLGLSISRELA+++GG +GL Sbjct: 682 MITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQMLGGRLGLV 741 Query: 761 SREGQGSIFTLYLPVKGQYSLLPGXXXXXXXXXXXXXPDYDSGRGEDYTQEASPAPLESV 820 S+ GQGS FTLYLP P P S ++ Q + A Sbjct: 742 SQPGQGSTFTLYLP-----QTYPETKTTVISQQQTSPPHQMSPVFQENLQPIAIAN---- 792 Query: 821 VVEDDREDLSSKDKVLLIIEDDEKFARILLDMARSRGFKGLVALQGDTGLNMATTYLPDA 880 + DDR + D++LLII+DD+KFARILLDMAR +GFK +V+L GL +A Y P+A Sbjct: 793 SIADDRGIIQQGDRLLLIIDDDDKFARILLDMARQQGFKAIVSLNSKQGLALAQQYQPNA 852 Query: 881 IILDIQLPVMDGWAILRELKGSSQTRHIPVHVISVNDEVKQGLMMGAMAYLRKPSTREAL 940 I LDI +P MDGW +L LK QTRHIPVH++SV+D ++ L +GA+ +L+KP + E L Sbjct: 853 ITLDIYMPDMDGWTLLDRLKHDPQTRHIPVHILSVDDREQRALQLGAITFLQKPVSPEIL 912 Query: 941 ERAFSQIESYTASTLKHLLVVEDDDIQRRSIMELIGHDDVAITAVSTGHEALAELRKQKY 1000 ++I+S+ +K LLV+EDD +Q +SI+ELIG+ DV AV+TG AL LR Q + Sbjct: 913 NHTLTEIKSFIDRKVKRLLVIEDDPVQAQSIIELIGNGDVQSIAVNTGAAALDILRSQHF 972 Query: 1001 DCXXXXXXXXXXTGFELLDQIRDDEELNDLPIIIYTGKDLDNKEETRLRKYAESIIIKDV 1060 DC +G +LL+QI+ + L LPII+YTGK++ +EET+LR+ AESIIIK+V Sbjct: 973 DCIVLDLGLPDMSGLQLLEQIKQEPSLLKLPIIVYTGKEISRQEETQLRRLAESIIIKNV 1032 Query: 1061 RSPERLLDETTLFLHRVEANLPEDKRKILQKLHNKEELFDGKKILLVDDDIRNVFALSSV 1120 RSPERLLDET+LFLHRV+ANLP+ +R+IL++LH + + +KIL++DDD+RN+FA++S+ Sbjct: 1033 RSPERLLDETSLFLHRVQANLPQPQRQILEQLHQTDTILANRKILIIDDDLRNIFAITSL 1092 Query: 1121 LEGYHMEVKFAENGREALDMLVEQEDFDLVLMDMMMPEMDGYEAMRRIRQMPQYQKLPII 1180 LE Y M+V FAENGR+ +D+L D + VLMD+MMPEMDGYE R IRQ Q++ LPII Sbjct: 1093 LESYQMQVLFAENGRDGIDILQANPDINAVLMDVMMPEMDGYETTRSIRQQKQFRTLPII 1152 Query: 1181 ALTAKAMKEDRAKCIEAGASDYMKKPISTEQLLSLMRVWLY 1221 ALTAKAM DR KCIEAGASDY+ KP+ TEQLLSL+RVWLY Sbjct: 1153 ALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWLY 1193 >ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus] dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1002 (43%), Positives = 612/1002 (61%), Gaps = 39/1002 (3%) Query: 231 RRIKVTSKDEIGEVARVFQNMAGDLEQKQEMEKAYAQAQSDQAWLNANIARVTELLRGVS 290 R I V ++ E+ + M +L + Q ++Q WL N+A+ T +L+G Sbjct: 408 RSIAVEAQGEVAILKDNINQMIANLRET-------TQKNTEQDWLKTNLAKFTRVLQGQR 460 Query: 291 SLEQVSQTFISEFTPVLGAEYGAIYLKD--QNHP--NLLSSSAYYAGEAGGKPKDSFEIG 346 LE VS+ +SE P++ A++G YL D +N P LLS+ AY + + + F +G Sbjct: 461 DLEAVSRLILSELAPLVSAQHGVFYLMDSAENRPCLKLLSTYAYRERK---RLANWFFLG 517 Query: 347 QGLVGQSALDKKPIKLANAPEDYVSVTSGFGGSHPDHILIYPVLFEDELMGVVEFASFTP 406 +GLVGQ AL+K+ I L + P DY+ ++SG G + P +I++ PVLFE ++ V+E ASF Sbjct: 518 EGLVGQCALEKERILLTDVPGDYIKISSGLGEAAPFNIVVLPVLFEGQVTAVIELASFRS 577 Query: 407 LSNLQNELLHQLANNLGVILNNISRRLVVEELLRESQAXXXXXXXXXXXXXXXXXXXXXX 466 S + L QL ++ ++LN I+ + E+LL++SQ+ Sbjct: 578 FSEIHLTFLDQLTESIAIVLNTIAASMRTEQLLKQSQSLAEELQSQQTELTDTNKRLEQQ 637 Query: 467 XXXXXXXTDAXXXXXXXXXXXXXXXXHYNTELVAKTRALEDQVQEVEEKKDEIEQARRQL 526 ++ N +L K R L Q +EVE K EIEQAR+ + Sbjct: 638 -------ANSLQASEERLKSQQEELQQTNEQLQEKARLLSIQNKEVERKNREIEQARQSV 690 Query: 527 EKQAMQLAVTSKYKSEFLANMSHELRTPXXXXXXXXXXXTENKEGNLTEKQVEFAHTIYM 586 E++A QLA+TSKYKSEFLANMSHELRTP ++N EGNL+EKQVE+ TI+ Sbjct: 691 EEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNAEGNLSEKQVEYGRTIHS 750 Query: 587 SGADLLKMIDEILDLSKVDAGKMELNYEEIPLTDLKTFVKQNFAPQAAKKGLSLRLLFDE 646 +GADLL +I++ILDL+K+++G M + E++ DL++ +++ F A +GL + Sbjct: 751 AGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERIFRQVANDRGLEFAVECAA 810 Query: 647 PLPDAIYTDSHRLKQILRNLLSNAFKFTSEGFVEFSVSAADKEQLPAF--LPHEYNYIAL 704 LP A+ TD RL+Q+L+NLLSNAFKFT+ G V V A PA L +A Sbjct: 811 NLPRAMLTDPKRLQQVLKNLLSNAFKFTALGSVTLRVEMATGGWDPASESLNRASGVVAF 870 Query: 705 SVKDSGIGIPADKTDIVFEAFQQVDGTTSRKYGGTGLGLSISRELARLMGGAIGLDSREG 764 SV D+GIGI DK ++FEAFQQ DG+TSRKYGGTGLGLSISRE+ARL+GG I L+S G Sbjct: 871 SVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSISREIARLLGGEIQLESEPG 930 Query: 765 QGSIFTLYLPVKGQYSLLPGXXXXXXXXXXXXXPDYDSGRGEDYTQEASPAPL------E 818 +GS FTL+LP+ LPG P T+E +PA Sbjct: 931 RGSTFTLFLPLDAP---LPGYSAGDWALFSLPEP-------VGATRERTPAAAMEGGWRS 980 Query: 819 SVVVEDDREDLSSKDKVLLIIEDDEKFARILLDMARSRGFKGLVALQGDTGLNMATTYLP 878 + DDR++L +D+VLLIIEDD FARIL D+AR+ GFK +VAL +TGL P Sbjct: 981 RAELNDDRDNLEPEDRVLLIIEDDANFARILGDLARTHGFKAVVALGSETGLAAVRDLQP 1040 Query: 879 DAIILDIQLPVMDGWAILRELKGSSQTRHIPVHVISVNDEVKQGLMMGAMAYLRKPSTRE 938 A++LDI LP MDGW +L LK +TRHIPVH++SV+D ++GL GA+A L+KP E Sbjct: 1041 HAVLLDIHLPGMDGWTVLDRLKHDPETRHIPVHLLSVDDAGQRGLQSGAVACLKKPVDSE 1100 Query: 939 ALERAFSQIESYTASTLKHLLVVEDDDIQRRSIMELIGHDDVAITAVSTGHEALAELRKQ 998 + F+++ ++ +K+LLV+EDD+ QR SI+ELIG DV AV+T EALA L+ + Sbjct: 1101 QMAAIFARMHAFADRKVKNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSE 1160 Query: 999 KYDCXXXXXXXXXXTGFELLDQIRDDEELNDLPIIIYTGKDLDNKEETRLRKYAESIIIK 1058 +DC G LL QI+ + +LP+I+YTG+DL ++E L++ E++I+K Sbjct: 1161 PFDCVVLDLGLPDADGQALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220 Query: 1059 DVRSPERLLDETTLFLHRVEANLPEDKRKILQKLHNKEELFDGKKILLVDDDIRNVFALS 1118 RS ERLLDET F+HRV+A LP +R+I+++L + + +K+L+VDDD+RN+FAL+ Sbjct: 1221 GERSAERLLDETARFMHRVQAELPAPQRQIIEQLRHSGSILAARKVLIVDDDVRNIFALT 1280 Query: 1119 SVLEGYHMEVKFAENGREALDMLVEQEDFDLVLMDMMMPEMDGYEAMRRIRQMPQYQKLP 1178 S LE M+V +AENG + + +L D+VLMD+MMP MDGYEA IR+ ++++LP Sbjct: 1281 SALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDGYEATAAIRRQVRFKELP 1340 Query: 1179 IIALTAKAMKEDRAKCIEAGASDYMKKPISTEQLLSLMRVWL 1220 I+ALTAKAM+ DR KC+EAGASDY+ KP+ TEQLLSL+RVWL Sbjct: 1341 IVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWL 1382 >ref|NP_762343.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] gb|AAO07333.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 1370 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1028 (43%), Positives = 598/1028 (58%), Gaps = 61/1028 (5%) Query: 233 IKVTSKDEIGEVARVFQNMAGDLEQKQEMEKAYAQAQSDQAWLNANIARVTELLRGVSSL 292 + + KDE+GE+ NMA L D WL + + LRG L Sbjct: 365 LTIDRKDELGELGSSLNNMASQLR--------------DLDWLKSGKETLDNELRGDIEL 410 Query: 293 EQVSQTFISEFTPVLGAEYGAIYLKDQNHPNLLSSSAYYAGEAGGKPKDSFEIGQGLVGQ 352 ++S FI FT L A+ GA YL + L +S A+ + AG + +IG+G+VGQ Sbjct: 411 SELSNRFIRFFTRHLNAQLGAFYLFENGQLELNASYAF-SDRAGNF--NRIQIGEGMVGQ 467 Query: 353 SALDKKPIKLANAPEDYVSVTSGFGGSHPDHILIYPVLFEDELMGVVEFASFTPLSNLQN 412 ++L+++ I + ++ G P H L P+ + +L+G V +F S +Q Sbjct: 468 ASLEQQVIAFNHVTDEAPVYNFAAGDCVPTHFLAIPLCVDKQLIGTVLLGAFHEFSPIQR 527 Query: 413 ELLHQLANNLGVILNNISRRLVVEELLRES--------------QAXXXXXXXXXXXXXX 458 ++++ NL ++ N RLV++ LL E+ +A Sbjct: 528 RFINEVVGNLAIVFNATKARLVIKSLLEETQQQKAHLSKANEDLEAQTQALRVSEEELQA 587 Query: 459 XXXXXXXXXXXXXXXTDAXXXXXXXXXXXXXXXXHYNTELVAKTRALEDQVQEVEEKKDE 518 T N EL +T+ALE Q E++EK + Sbjct: 588 QQEELRVTNEELEEQTKVLRASEAELQAQQEELRVTNEELEERTKALESQQVEMKEKNEA 647 Query: 519 IEQARRQLEKQAMQLAVTSKYKSEFLANMSHELRTPXXXXXXXXXXXTENKEGNLTEKQV 578 + QA+ +E++A +L + SKYKSEFLANMSHELRTP NK+GNLT KQ+ Sbjct: 648 LHQAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQI 707 Query: 579 EFAHTIYMSGADLLKMIDEILDLSKVDAGKMELNYEEIPLTDLKTFVKQNFAPQAAKKGL 638 E A I SG+DLL +I+EILDLSKV+AGK++L+ E++PL ++ + + + A KGL Sbjct: 708 ESAKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLYQDIADDKGL 767 Query: 639 SLRLLFDEPLPDAIYTDSHRLKQILRNLLSNAFKFTSEGFVEFSVSAADKEQLPAFLPHE 698 +++ LP + TD+ RL+QILRNLL+NAFKFT EG V +++ EQ Sbjct: 768 DFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDKPR 827 Query: 699 YNYIALSVKDSGIGIPADKTDIVFEAFQQVDGTTSRKYGGTGLGLSISRELARLMGGAIG 758 IA SVKD GIGI ++ +F+AFQQ DG+TSRKYGGTGLGLSIS+EL L+GG I Sbjct: 828 EALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGRIH 887 Query: 759 LDSREGQGSIFTLYLPVK------------GQYSLLPGXXXXXXXXXXXXXPDYDSGRGE 806 L S EG+GSIFT+ P + SL P P D+ Sbjct: 888 LKSEEGKGSIFTVIFPTRYEVKESESQPTLSPISLAPMEPMDVVEREEPTPPAQDAP--- 944 Query: 807 DYTQEASPAP-------LESV------VVEDDREDLSSKDKVLLIIEDDEKFARILLDMA 853 + E P P +S+ VEDDR+ + +D+ LLIIEDD FA ++ D Sbjct: 945 --SVEKEPVPQLNGFKKADSIKQDNDSYVEDDRQTVVPEDRTLLIIEDDRAFASVMRDFG 1002 Query: 854 RSRGFKGLVALQGDTGLNMATTYLPDAIILDIQLPVMDGWAILRELKGSSQTRHIPVHVI 913 R RGFK +VA G+TGL+ A Y P AIILDI LP +DGW ++ LK + +TRHIPVH + Sbjct: 1003 RERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGWTVMERLKENPETRHIPVHFM 1062 Query: 914 SVNDEVKQGLMMGAMAYLRKPSTREALERAFSQIESYTASTLKHLLVVEDDDIQRRSIME 973 S ND L MGA+ YL KP + LE+AF IE + +K LLVVEDD IQ+ SI + Sbjct: 1063 SANDANLDALRMGAIGYLTKPVDMKKLEKAFGNIEDILSKPVKRLLVVEDDAIQQESIRQ 1122 Query: 974 LIGHDDVAITAVSTGHEALAELRKQKYDCXXXXXXXXXXTGFELLDQIRDDEELNDLPII 1033 LIG DD+ I AV TG +AL EL +YDC TGFELL++IR E +PII Sbjct: 1123 LIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGFELLERIRRSETAARVPII 1182 Query: 1034 IYTGKDLDNKEETRLRKYAESIIIKDVRSPERLLDETTLFLHRVEANLPEDKRKILQKLH 1093 +YTG++L +EE L +YAESIIIK V+SPERLLDE+ LFLHRVEANLP ++R IL+ +H Sbjct: 1183 VYTGRELSKEEERELNRYAESIIIKGVKSPERLLDESALFLHRVEANLPSEQRGILRAVH 1242 Query: 1094 NKEELFDGKKILLVDDDIRNVFALSSVLEGYHMEVKFAENGREALDMLVEQEDFDLVLMD 1153 NKE + GKK+LLVDDD+RNVFALSS+LE M++ A +G E+LD L E D D+VLMD Sbjct: 1243 NKESVLTGKKVLLVDDDMRNVFALSSILEDKGMDIVIARDGVESLDKLKENPDIDVVLMD 1302 Query: 1154 MMMPEMDGYEAMRRIRQMPQYQKLPIIALTAKAMKEDRAKCIEAGASDYMKKPISTEQLL 1213 +MMP+MDGYEAM IR+ Y+KLP+IALTAKAMK DR+KCIEAGASDY+ KP++T++LL Sbjct: 1303 IMMPKMDGYEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLL 1362 Query: 1214 SLMRVWLY 1221 S++RVWLY Sbjct: 1363 SMLRVWLY 1370 >ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 1381 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1028 (43%), Positives = 598/1028 (58%), Gaps = 61/1028 (5%) Query: 233 IKVTSKDEIGEVARVFQNMAGDLEQKQEMEKAYAQAQSDQAWLNANIARVTELLRGVSSL 292 + + KDE+GE+ NMA L D WL + + LRG L Sbjct: 376 LTIDRKDELGELGSSLNNMASQLR--------------DLDWLKSGKETLDNELRGDIEL 421 Query: 293 EQVSQTFISEFTPVLGAEYGAIYLKDQNHPNLLSSSAYYAGEAGGKPKDSFEIGQGLVGQ 352 ++S FI FT L A+ GA YL + L +S A+ + AG + +IG+G+VGQ Sbjct: 422 SELSNRFIRFFTRHLNAQLGAFYLFENGQLELNASYAF-SDRAGNF--NRIQIGEGMVGQ 478 Query: 353 SALDKKPIKLANAPEDYVSVTSGFGGSHPDHILIYPVLFEDELMGVVEFASFTPLSNLQN 412 ++L+++ I + ++ G P H L P+ + +L+G V +F S +Q Sbjct: 479 ASLEQQVIAFNHVTDEAPVYNFAAGDCVPTHFLAIPLCVDKQLIGTVLLGAFHEFSPIQR 538 Query: 413 ELLHQLANNLGVILNNISRRLVVEELLRES--------------QAXXXXXXXXXXXXXX 458 ++++ NL ++ N RLV++ LL E+ +A Sbjct: 539 RFINEVVGNLAIVFNATKARLVIKSLLEETQQQKAHLSKANEDLEAQTQALRVSEEELQA 598 Query: 459 XXXXXXXXXXXXXXXTDAXXXXXXXXXXXXXXXXHYNTELVAKTRALEDQVQEVEEKKDE 518 T N EL +T+ALE Q E++EK + Sbjct: 599 QQEELRVTNEELEEQTKVLRASEAELQAQQEELRVTNEELEERTKALESQQVEMKEKNEA 658 Query: 519 IEQARRQLEKQAMQLAVTSKYKSEFLANMSHELRTPXXXXXXXXXXXTENKEGNLTEKQV 578 + QA+ +E++A +L + SKYKSEFLANMSHELRTP NK+GNLT KQ+ Sbjct: 659 LHQAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQI 718 Query: 579 EFAHTIYMSGADLLKMIDEILDLSKVDAGKMELNYEEIPLTDLKTFVKQNFAPQAAKKGL 638 E A I SG+DLL +I+EILDLSKV+AGK++L+ E++PL ++ + + + A KGL Sbjct: 719 ESAKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLYQDIADDKGL 778 Query: 639 SLRLLFDEPLPDAIYTDSHRLKQILRNLLSNAFKFTSEGFVEFSVSAADKEQLPAFLPHE 698 +++ LP + TD+ RL+QILRNLL+NAFKFT EG V +++ EQ Sbjct: 779 DFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDKPR 838 Query: 699 YNYIALSVKDSGIGIPADKTDIVFEAFQQVDGTTSRKYGGTGLGLSISRELARLMGGAIG 758 IA SVKD GIGI ++ +F+AFQQ DG+TSRKYGGTGLGLSIS+EL L+GG I Sbjct: 839 EALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGRIH 898 Query: 759 LDSREGQGSIFTLYLPVK------------GQYSLLPGXXXXXXXXXXXXXPDYDSGRGE 806 L S EG+GSIFT+ P + SL P P D+ Sbjct: 899 LKSEEGKGSIFTVIFPTRYEVKESESQPTLSPISLAPMEPMDVVEREEPTPPAQDAP--- 955 Query: 807 DYTQEASPAP-------LESV------VVEDDREDLSSKDKVLLIIEDDEKFARILLDMA 853 + E P P +S+ VEDDR+ + +D+ LLIIEDD FA ++ D Sbjct: 956 --SVEKEPIPQLNGFKKADSIKQDNDSYVEDDRQTVVPEDRTLLIIEDDRAFASVMRDFG 1013 Query: 854 RSRGFKGLVALQGDTGLNMATTYLPDAIILDIQLPVMDGWAILRELKGSSQTRHIPVHVI 913 R RGFK +VA G+TGL+ A Y P AIILDI LP +DGW ++ LK + +TRHIPVH + Sbjct: 1014 RERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGWTVMERLKENPETRHIPVHFM 1073 Query: 914 SVNDEVKQGLMMGAMAYLRKPSTREALERAFSQIESYTASTLKHLLVVEDDDIQRRSIME 973 S ND L MGA+ YL KP + LE+AF IE + +K LLVVEDD IQ+ SI + Sbjct: 1074 SANDANLDALRMGAIGYLTKPVDMKKLEKAFGNIEDILSKPVKRLLVVEDDAIQQESIRQ 1133 Query: 974 LIGHDDVAITAVSTGHEALAELRKQKYDCXXXXXXXXXXTGFELLDQIRDDEELNDLPII 1033 LIG DD+ I AV TG +AL EL +YDC TGFELL++IR E +PII Sbjct: 1134 LIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGFELLERIRRSETAARVPII 1193 Query: 1034 IYTGKDLDNKEETRLRKYAESIIIKDVRSPERLLDETTLFLHRVEANLPEDKRKILQKLH 1093 +YTG++L +EE L +YAESIIIK V+SPERLLDE+ LFLHRVEANLP ++R IL+ +H Sbjct: 1194 VYTGRELSKEEERELNRYAESIIIKGVKSPERLLDESALFLHRVEANLPSEQRGILRAVH 1253 Query: 1094 NKEELFDGKKILLVDDDIRNVFALSSVLEGYHMEVKFAENGREALDMLVEQEDFDLVLMD 1153 NKE + GKK+LLVDDD+RNVFALSS+LE M++ A +G E+LD L E D D+VLMD Sbjct: 1254 NKESVLTGKKVLLVDDDMRNVFALSSILEDKGMDIVIARDGLESLDKLKENPDIDVVLMD 1313 Query: 1154 MMMPEMDGYEAMRRIRQMPQYQKLPIIALTAKAMKEDRAKCIEAGASDYMKKPISTEQLL 1213 +MMP+MDGYEAM IR+ Y+KLP+IALTAKAMK DR+KCIEAGASDY+ KP++T++LL Sbjct: 1314 IMMPKMDGYEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLL 1373 Query: 1214 SLMRVWLY 1221 S++RVWLY Sbjct: 1374 SMLRVWLY 1381 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,535,633,473 Number of extensions: 62419279 Number of successful extensions: 263450 Number of sequences better than 1.0e-05: 7687 Number of HSP's gapped: 255447 Number of HSP's successfully gapped: 9561 Length of query: 1222 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1085 Effective length of database: 385,269,015 Effective search space: 418016881275 Effective search space used: 418016881275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)