BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0013.p
         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00182039.1| hypothetical protein Exigu267501 [Exiguobacte...    60   2e-08
ref|NP_691549.1| positive regulator of sigma-B activity [Oceanob...    59   3e-08
ref|NP_977407.1| anti sigma b factor antagonist RsbV [Bacillus c...    59   4e-08
gb|EAB98682.1| unknown [environmental sequence]                        59   5e-08
gb|EAB03546.1| unknown [environmental sequence]                        59   5e-08

>ref|ZP_00182039.1| hypothetical protein Exigu267501 [Exiguobacterium sp. 255-15]
          Length = 108

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 12  RTETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGIGILLS 71
           +TE     + +Y+ GE+D   AP  R  + P V     D+V++L E+ Y+DSTG+G+ + 
Sbjct: 6   KTEQLDGQTHLYIAGEIDTYTAPKLRQELVPAVETN--DVVVHLDEIHYMDSTGLGVFVG 63

Query: 72  ILKARHGMDVKFSVEEVPPQIQKLFDMTGISKFF 105
            LKA       F++  V  +I++LF++TG+S   
Sbjct: 64  ALKASKKNGTSFTLVGVSERIRRLFEITGLSSII 97


>ref|NP_691549.1| positive regulator of sigma-B activity [Oceanobacillus iheyensis
           HTE831]
 dbj|BAC12584.1| positive regulator of sigma-B activity (anti-anti-sigma factor)
           [Oceanobacillus iheyensis HTE831]
          Length = 110

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 14  ETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGIGILLSIL 73
           E+ G V  + + GE+D   AP  +  + PLV D+  ++ ++L+E+ Y+DSTG+G+ +S L
Sbjct: 9   ESNGQV-VLKVAGEIDAYTAPKLKETLLPLVKDSSNNIQVDLEEVNYMDSTGLGVFVSAL 67

Query: 74  KARHGMDVKFSVEEVPPQIQKLFDMTGISKFF 105
           KA       F +  V  ++ ++F++TG+ +  
Sbjct: 68  KASKESKSNFELINVQDRVYRIFEITGLDEII 99


>ref|NP_977407.1| anti sigma b factor antagonist RsbV [Bacillus cereus ATCC 10987]
 gb|AAS40015.1| anti sigma b factor antagonist RsbV [Bacillus cereus ATCC 10987]
          Length = 111

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 52/85 (61%)

Query: 21  TVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGIGILLSILKARHGMD 80
           TV L GE+D   A D +  + P+  +  + +V++  E+ Y+DSTG+G+ +++LKA    D
Sbjct: 15  TVQLNGEIDAYTASDLKNKIMPIASEKEVHIVVDFTEVEYMDSTGLGVFIALLKAVKKND 74

Query: 81  VKFSVEEVPPQIQKLFDMTGISKFF 105
            K     V  ++++LFD+TG+++  
Sbjct: 75  GKLEFIGVSKRLKRLFDITGLTEIL 99


>gb|EAB98682.1| unknown [environmental sequence]
          Length = 94

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 13 TETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGIGILLSI 72
          TE E N+STV+L GE+D+ VA + R V+ PL+ D+G ++ +NLK ++Y+DS+GI +L+  
Sbjct: 6  TEVE-NISTVFLDGEIDMDVADNVREVVFPLI-DSGKEVHLNLKGVQYMDSSGISVLVES 63

Query: 73 LKARHGMDVKFSVEEVPPQIQKLFDMT 99
           +     + K  ++EV   ++K+  M 
Sbjct: 64 NQRAKQKNTKVELKEVSQPVEKVLAMA 90


>gb|EAB03546.1| unknown [environmental sequence]
          Length = 94

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 13 TETEGNVSTVYLIGELDLSVAPDFRLVMEPLVGDTGLDLVINLKELRYIDSTGIGILLSI 72
          TE E N+STV+L GE+D+ +A + R V+ PL+ D+G ++ +N+K+++Y+DS+GI +++  
Sbjct: 6  TENE-NISTVFLNGEIDMDIADNVREVIFPLI-DSGKEVHLNMKDVQYMDSSGISVIVES 63

Query: 73 LKARHGMDVKFSVEEVPPQIQKLFDMT 99
           +     + K  ++EV   ++K+  M 
Sbjct: 64 NQRAKEKNTKVELKEVSQPVEKVLAMA 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 163,214,196
Number of extensions: 6028424
Number of successful extensions: 12100
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 12098
Number of HSP's successfully gapped: 70
Length of query: 112
Length of database: 757,237,578
Length adjustment: 78
Effective length of query: 34
Effective length of database: 545,459,856
Effective search space: 18545635104
Effective search space used: 18545635104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)