BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0006.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB40636.1| inner membrane protein ORF-2 [Thermoactinomyces ... 342 8e-93 ref|NP_721908.1| putative maltose/maltodextrin ABC transporter, ... 335 9e-91 ref|NP_269422.1| putative maltose/maltodextrin ABC transport sys... 335 1e-90 ref|NP_688439.1| maltose ABC transporter, permease protein [Stre... 334 2e-90 ref|NP_607422.1| putative maltose/maltodextrin ABC transport sys... 332 9e-90 >dbj|BAB40636.1| inner membrane protein ORF-2 [Thermoactinomyces vulgaris] Length = 407 Score = 342 bits (878), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 259/419 (61%), Gaps = 14/419 (3%) Query: 16 GLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGELPSRMVKVGKMTRMVEG 75 GLGQMYN QW+KG+ FL+ +++ L G++TLG +P Sbjct: 2 GLGQMYNGQWVKGVLFLVCRLSYLLVFYDLFNLGLWGIVTLGTIPGV------------- 48 Query: 76 DHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFGQSLKYMGRRHFA 135 D+S+ + RDA+ VGA R R + ++ +++ R F Sbjct: 49 DNSMELLAEGLISLLLILFGLFFYGLNIRDAYKVGAMRERGIRPPGVMETCRHVTDRGFP 108 Query: 136 YLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVDWVGFGNFKKMLSLDVWST 195 Y V+A + ++F+ + P++F V +AFTN+ PPA LV +VG NF + L W Sbjct: 109 YFVMAPSMILLMFIVLFPILFMVTIAFTNFDLYHQPPAKLVSYVGVDNFINLFRLSFWKN 168 Query: 196 TFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLIVPFAIPNMISLLV 255 +F G+L+WT+ W +++T G+ +AVL++Q R+R KK +RT+LI+P+A+P+ +++LV Sbjct: 169 SFLGVLSWTVVWTLVSTTVQVALGLFLAVLLNQKRLRIKKFFRTVLILPWAVPSFVTILV 228 Query: 256 MRNMFNNQFGPVNKYLGMIGLNGLPWLTDPFWAKVTVILANMWIGIPVTMILAFGVLTTI 315 +F++ FGPVN +L +GL +PW++DPFW KV V+L W+G P ++ L GVL +I Sbjct: 229 FSGLFDDNFGPVNHFLVALGLKAIPWMSDPFWCKVAVLLIQFWLGFPFSLALYTGVLQSI 288 Query: 316 PRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFNVIYLMTNGEPVNP 375 RDLYEAAEVDGA KFR ITLPM L++TAP+LI+Q+AGN N+FNVIYL G P P Sbjct: 289 SRDLYEAAEVDGATVWQKFRHITLPMALYSTAPLLIVQYAGNFNNFNVIYLFNKGLPAVP 348 Query: 376 HYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSYRRTRSYKEEDMI 434 Q AG TD+L++W+YKL S+Y++A+ I I+I L+VA ++W +R TRS+KEE MI Sbjct: 349 G-QTAGGTDILISWVYKLTFETSKYNYAAAISIMIGLIVAVLAVWQFRNTRSFKEEGMI 406 >ref|NP_721908.1| putative maltose/maltodextrin ABC transporter, permease protein MalF [Streptococcus mutans UA159] gb|AAN59214.1| putative maltose/maltodextrin ABC transporter, permease protein MalF [Streptococcus mutans UA159] Length = 453 Score = 335 bits (860), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 260/435 (59%), Gaps = 9/435 (2%) Query: 3 KKTGAAV-LSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGE--- 58 KK G + LS VI G + N+Q++KGL FLL+ +A+ + GL+TLG Sbjct: 17 KKGGIDIKLSFVIMGFANLMNKQFIKGLLFLLSEIAFLIAFVTQVIPAFSGLLTLGTKTQ 76 Query: 59 -LPSRMVKVGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQE 117 + ++V K+ VEGD+S+ M + A + + Sbjct: 77 GMQEKIVDGVKLQVAVEGDNSMLMLIFGLASLIFCLVFAYIYWCNLKSARNLYMLKKEGR 136 Query: 118 QIRSFGQSLKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVD 177 I SF + + F ++ IPL ++ TILPLV+ + LAFTNY LPP +L D Sbjct: 137 HIPSFKEDFMTLANGRFHMTLMFIPLIGVLLFTILPLVYMICLAFTNYDHNHLPPKSLFD 196 Query: 178 WVGFGNFKKMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLW 237 WVG NF +L+ + + TF +L+WTL WAV ATVT ++ GV++A++I+ ++ KK+W Sbjct: 197 WVGLANFGNVLNGRM-AGTFFPVLSWTLIWAVFATVTNFLFGVILALIINAKGLKLKKMW 255 Query: 238 RTLLIVPFAIPNMISLLVMRNMFNNQFGPVNKYLGMIGL--NGLPWLTDPFWAKVTVILA 295 RT+ ++ A+P ISLL+MRN N+Q GP+N +L IGL + LP+L+DP WAK ++I Sbjct: 256 RTIFVITIAVPQFISLLLMRNFLNDQ-GPLNAFLEKIGLISHSLPFLSDPTWAKFSIIFV 314 Query: 296 NMWIGIPVTMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFA 355 NMW+GIP TM++A G++ +P + EAAE+DGA F+ IT P +L P LI QF Sbjct: 315 NMWVGIPFTMLVATGIIMNLPSEQIEAAEIDGASKFQIFKSITFPQILLIMMPSLIQQFI 374 Query: 356 GNINSFNVIYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVA 415 GNIN+FNVIYL+T G P N + AG TDLLVTWLYKL +N + Y+ ASVIGI IF + A Sbjct: 375 GNINNFNVIYLLTGGGPTNSQFYQAGSTDLLVTWLYKLTMNAADYNLASVIGIFIFAISA 434 Query: 416 TFSIWSYRRTRSYKE 430 FS+ +Y T SYKE Sbjct: 435 IFSLLAYTHTASYKE 449 >ref|NP_269422.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes] ref|NP_664788.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes MGAS315] ref|NP_802132.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes SSI-1] gb|AAK34143.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes M1 GAS] gb|AAM79591.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes MGAS315] dbj|BAC63965.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes SSI-1] Length = 453 Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 179/427 (41%), Positives = 262/427 (61%), Gaps = 8/427 (1%) Query: 10 LSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGE----LPSRMVK 65 LS++I G N+Q++KG+ FL++ + + + +RGL+TLG + ++ + Sbjct: 25 LSSIIMGFANFANKQFIKGILFLISELIFLVAFVSQIIPAIRGLVTLGTQTQGMTTKTID 84 Query: 66 VGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFGQS 125 + V+GD+S+ M + A + + + ++I SF + Sbjct: 85 GINIQVAVDGDNSMLMLIFGLASLIFCLVFAYIYWCNLKSARNLYLFKQKGQKIPSFKED 144 Query: 126 LKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVDWVGFGNFK 185 L + F ++AIPL ++ TILPL++ + LAFTN+ LPP +L DWVG NF Sbjct: 145 LATLTNGRFHMTLMAIPLIGVLLFTILPLIYMICLAFTNFDHNHLPPKSLFDWVGLANFG 204 Query: 186 KMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLIVPF 245 +LS + + TF I +WTL WAV ATVT + G+++A+LI+ +++KK+WRT+ ++ Sbjct: 205 NVLSGRM-AGTFFPIFSWTLIWAVFATVTNFFFGIILALLINTKGLKWKKMWRTIFVITI 263 Query: 246 AIPNMISLLVMRNMFNNQFGPVNKYLGMIGL-NG-LPWLTDPFWAKVTVILANMWIGIPV 303 A+P ISLL+MRN+ N++ GP+N L IGL NG LP+L+DP WAK ++I NMWIGIP Sbjct: 264 AVPQFISLLIMRNLLNDE-GPLNALLNKIGLINGSLPFLSDPLWAKFSIIFVNMWIGIPF 322 Query: 304 TMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFNV 363 TM++A G++ +P + EAAE+DGA F+ IT P +L P LI QF GNIN+FNV Sbjct: 323 TMLIATGIIMNLPSEQIEAAEIDGASKFQVFKSITFPQILLIMTPNLIQQFIGNINNFNV 382 Query: 364 IYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSYR 423 IYL+T G P N Y AG TDLLVTWLYKL + + Y+ ASVIGI+IF + A FS+ +Y Sbjct: 383 IYLLTGGGPTNSEYYQAGTTDLLVTWLYKLTVTAADYNLASVIGILIFTVSAIFSLLAYT 442 Query: 424 RTRSYKE 430 RT SYKE Sbjct: 443 RTASYKE 449 >ref|NP_688439.1| maltose ABC transporter, permease protein [Streptococcus agalactiae 2603V/R] ref|NP_735948.1| Unknown [Streptococcus agalactiae NEM316] gb|AAN00312.1| maltose ABC transporter, permease protein [Streptococcus agalactiae 2603V/R] emb|CAD47170.1| Unknown [Streptococcus agalactiae NEM316] Length = 456 Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 180/432 (41%), Positives = 263/432 (60%), Gaps = 10/432 (2%) Query: 7 AAVLSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGE----LPSR 62 A LS +I GL + N+Q +KGL FL++ + + + + ++GLI+LG + ++ Sbjct: 23 ATKLSFLIMGLANLKNKQIVKGLLFLISEILFLITFVYQVIPAVKGLISLGTQEQGMTTK 82 Query: 63 MVKVGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSF 122 V K+ +GD+S+ M + A + + +I SF Sbjct: 83 TVDGIKIQVATQGDNSMLMLIFGLASLIFCCVFAYIYWSNIKSAAHLLTLKEEGREIPSF 142 Query: 123 GQSLKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVDWVGFG 182 + +K + F +++IPL ++ TILPLV+ + LAFTNY LPP +L DWVGF Sbjct: 143 KKDIKSLTDGRFHMTLMSIPLIGVLLFTILPLVYMICLAFTNYDHNHLPPKSLFDWVGFA 202 Query: 183 NFKKMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLI 242 NF + S + ++TF +L+WTL WAV ATVT + G+++A+LI+ ++FKK+WRT+ + Sbjct: 203 NFGNIFSGRM-ASTFFPVLSWTLIWAVFATVTNFFFGIILALLINTKGLKFKKMWRTIFV 261 Query: 243 VPFAIPNMISLLVMRNMFNNQFGPVNKYLGMIGL----NGLPWLTDPFWAKVTVILANMW 298 + A+P ISLL+MRN+ ++ GPVN L GL + LP+L+DP WAK ++I NMW Sbjct: 262 ITMAVPQFISLLIMRNLLSDA-GPVNALLIKWGLISSAHPLPFLSDPVWAKFSIIFVNMW 320 Query: 299 IGIPVTMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNI 358 +GIPVTM++A G++ +P + EAAE+DGA F+ IT P +L P LI QF GNI Sbjct: 321 VGIPVTMLVATGIIMNLPAEQIEAAEIDGANKFQVFQSITFPQILLIMTPTLIQQFIGNI 380 Query: 359 NSFNVIYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFS 418 N+FNVIYL+T G P N Y AG TDLLVTWLY L + + Y+ ASV+GI+IF+L A FS Sbjct: 381 NNFNVIYLLTQGGPTNSTYYQAGSTDLLVTWLYNLTVTAADYNLASVVGILIFILSAVFS 440 Query: 419 IWSYRRTRSYKE 430 + +Y RT SYKE Sbjct: 441 LLAYTRTNSYKE 452 >ref|NP_607422.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes MGAS8232] gb|AAL97921.1| putative maltose/maltodextrin ABC transport system (permease) [Streptococcus pyogenes MGAS8232] Length = 453 Score = 332 bits (852), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 178/427 (41%), Positives = 261/427 (61%), Gaps = 8/427 (1%) Query: 10 LSAVIPGLGQMYNRQWLKGLAFLLTGMAWFYFMTHGLTGHLRGLITLGE----LPSRMVK 65 LS++I G N+Q++KG+ FL++ + + + +RGL+TLG + ++ + Sbjct: 25 LSSIIMGFANFANKQFIKGILFLISELIFLVAFVSQIIPAIRGLVTLGTQTQGMTTKTID 84 Query: 66 VGKMTRMVEGDHSIFMXXXXXXXXXXXXXXXXXXXXXXRDAFMVGAARARQEQIRSFGQS 125 + V+GD+S+ M + A + + + ++I SF + Sbjct: 85 GINIQVAVDGDNSMLMLIFGLASLIFCLVFAYIYWCNLKSARNLYLFKQKGQKIPSFKED 144 Query: 126 LKYMGRRHFAYLVLAIPLTAIVFLTILPLVFSVLLAFTNYADPILPPANLVDWVGFGNFK 185 L + F ++AIPL ++ TILPL++ + LAFTN+ LPP +L DWVG NF Sbjct: 145 LATLTNGRFHMTLMAIPLIGVLLFTILPLIYMICLAFTNFDHNHLPPKSLFDWVGLANFG 204 Query: 186 KMLSLDVWSTTFGGILTWTLCWAVIATVTTYIGGVLVAVLIHQPRVRFKKLWRTLLIVPF 245 +LS + + TF I +WTL WAV ATVT + G+++A+LI+ +++KK+WRT+ ++ Sbjct: 205 NVLSGRM-AGTFFPIFSWTLIWAVFATVTNFFFGIILALLINTKGLKWKKMWRTIFVITI 263 Query: 246 AIPNMISLLVMRNMFNNQFGPVNKYLGMIGL-NG-LPWLTDPFWAKVTVILANMWIGIPV 303 A+P ISLL+MRN+ N++ GP+N L IGL NG LP+L+D WAK ++I NMWIGIP Sbjct: 264 AVPQFISLLIMRNLLNDE-GPLNALLNKIGLINGSLPFLSDSLWAKFSIIFVNMWIGIPF 322 Query: 304 TMILAFGVLTTIPRDLYEAAEVDGAGSAHKFRMITLPMVLFATAPILIMQFAGNINSFNV 363 TM++A G++ +P + EAAE+DGA F+ IT P +L P LI QF GNIN+FNV Sbjct: 323 TMLIATGIIMNLPSEQIEAAEIDGASKFQVFKSITFPQILLIMTPNLIQQFIGNINNFNV 382 Query: 364 IYLMTNGEPVNPHYQYAGDTDLLVTWLYKLALNQSQYSFASVIGIIIFLLVATFSIWSYR 423 IYL+T G P N Y AG TDLLVTWLYKL + + Y+ ASVIGI+IF + A FS+ +Y Sbjct: 383 IYLLTGGGPTNSEYYQAGTTDLLVTWLYKLTVTAADYNLASVIGILIFTVSAIFSLLAYT 442 Query: 424 RTRSYKE 430 RT SYKE Sbjct: 443 RTASYKE 449 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 618,206,544 Number of extensions: 25357472 Number of successful extensions: 84870 Number of sequences better than 1.0e-05: 1271 Number of HSP's gapped: 84030 Number of HSP's successfully gapped: 1271 Length of query: 435 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 306 Effective length of database: 406,989,807 Effective search space: 124538880942 Effective search space used: 124538880942 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)