BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0003.p
         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_654341.1| hypothetical protein predicted by GeneMark [Bac...    52   6e-06

>ref|NP_654341.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_842950.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_976847.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP24436.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS39455.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 74

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 38/74 (51%)

Query: 1  MDLSQPTQENVEYMIEGIXXXXXXXXXXXXXXXXXXXXNYEDILDIYEVAMGSDRLSISQ 60
          MDLS  ++ENVEYM+E I                     YED+ DIYE  M  +  SIS+
Sbjct: 1  MDLSVKSEENVEYMVEAIKEKLRMVNAGAMRAASFNEEMYEDLRDIYEHVMKRETFSISE 60

Query: 61 VEALVSELGRLRDK 74
          ++A+  ELG L  K
Sbjct: 61 MQAITEELGTLIKK 74


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.134    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 61,974,846
Number of extensions: 1104392
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 2
Length of query: 74
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 30
Effective length of database: 637,773,222
Effective search space: 19133196660
Effective search space used: 19133196660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)