BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0002.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391975.1| yyaC [Bacillus subtilis] >gi|586851|sp|P37521|Y... 106 2e-22 ref|NP_244922.1| BH4054~unknown conserved protein in B. subtilis... 106 3e-22 ref|NP_350307.1| Uncharacterized protein, YYAC B.subtilis homolo... 104 8e-22 ref|NP_981921.1| conserved hypothetical protein [Bacillus cereus... 104 1e-21 ref|NP_653945.1| hypothetical protein predicted by GeneMark [Bac... 103 2e-21 >ref|NP_391975.1| yyaC [Bacillus subtilis] sp|P37521|YYAC_BACSU Hypothetical protein yyaC pir||I40446 hypothetical protein yyaC - Bacillus subtilis emb|CAA44410.1| unnamed protein product [Bacillus subtilis] dbj|BAA05225.1| unknown [Bacillus subtilis] emb|CAB16132.1| yyaC [Bacillus subtilis subsp. subtilis str. 168] Length = 205 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 5/135 (3%) Query: 46 ITFLCIGTDRSTGDALGPLTGSQLLEQGFP--HVSGTMPSPCDADNLEARIAEIPA---G 100 I +CIGTDRSTGD+LGPL G +L + HV GT+ P A N++ +I +I Sbjct: 45 IVVVCIGTDRSTGDSLGPLVGMKLKQMQLTRFHVYGTLSDPVHAVNMKDKINDIHKLHKN 104 Query: 101 QIVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSLAAIVDVYGPRPYRTLQ 160 VIAVDACLG S+G F D PL+P V +LP VG + IV+V G Y LQ Sbjct: 105 PFVIAVDACLGRVKSVGSFQIGDGPLKPGAGVQKDLPEVGDLHINGIVNVSGFMEYFVLQ 164 Query: 161 STPLHRVMVMAKQIA 175 +T L+ VM MA +A Sbjct: 165 NTRLNLVMNMANVLA 179 >ref|NP_244922.1| BH4054~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||F84156 hypothetical protein BH4054 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07773.1| BH4054~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 216 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 5/143 (3%) Query: 38 ASQHPPEQITFLCIGTDRSTGDALGPLTGSQLLEQGFP--HVSGTMPSPCDADNLEARIA 95 S + ++ +CIGTDRSTGDALGP+ G+ L ++ HV GT+ P A NLE ++ Sbjct: 35 VSSYRHRELVIVCIGTDRSTGDALGPIVGTALTKECLNCFHVYGTLADPVHAVNLEEKLK 94 Query: 96 EIPAGQ---IVIAVDACLGPPASLGYFLTADEPLRPAQSVGLNLPAVGHYSLAAIVDVYG 152 I +IA+DACLG +S+G A P++P +V LPAVG L IV++ G Sbjct: 95 LIEKKHRRPFIIAIDACLGKLSSVGKVSLAAGPVQPGAAVNKKLPAVGDVHLTGIVNIGG 154 Query: 153 PRPYRTLQSTPLHRVMVMAKQIA 175 Y LQ+T LH VM +A I+ Sbjct: 155 MMEYFVLQNTRLHTVMQLADTIS 177 >ref|NP_350307.1| Uncharacterized protein, YYAC B.subtilis homolog [Clostridium acetobutylicum] pir||D97357 uncharacterized protein, YYAC B. subtilis homolog [imported] - Clostridium acetobutylicum gb|AAK81647.1| Uncharacterized protein, YYAC B.subtilis homolog [Clostridium acetobutylicum] Length = 195 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 17 QESRKRKKRDASGLIFFFR-----EIASQHPPEQITFLCIGTDRSTGDALGPLTGSQL-- 69 E R D S +++ F EI S I FLCIGTDRSTGD+LGP+ G +L Sbjct: 1 MEKRIVFNVDDSNILYSFSNYLSSEIKSIAVNRDIVFLCIGTDRSTGDSLGPMVGYKLTK 60 Query: 70 LEQGFPHVSGTMPSPCDADNLEARIAEIPAGQ---IVIAVDACLGPPASLGYFLTADEPL 126 + V GT+ P A NL + I +IA+DACLG ++G + + PL Sbjct: 61 FHKNNLIVFGTLQEPVHAKNLCNTMDIIKTKYENPFIIAIDACLGSTKTVGNIVIQNTPL 120 Query: 127 RPAQSVGLNLPAVGHYSLAAIVDVYGPRPYRTLQSTPLHRVMVMAKQIA 175 P ++ +LP VG S+ IV+V GP + LQST L+ V+ +A I+ Sbjct: 121 SPGSAMNKSLPTVGDLSITGIVNVSGPFDFMVLQSTRLYSVLKLADIIS 169 >ref|NP_981921.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS44529.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 198 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 12/170 (7%) Query: 15 REQESRKRKKRDASGLI--FFFREI-ASQHPPEQITFLCIGTDRSTGDALGPLTGSQLLE 71 +E ++ + +AS I F I H P I +CIGTDRSTGDALGPL G++L + Sbjct: 13 KETQNVMHQDLEASETISNFLLSHIPIKNHIP--IILVCIGTDRSTGDALGPLVGTKLEQ 70 Query: 72 QGFPH--VSGTMPSPCDADNLEARIAEI----PAGQIVIAVDACLGPPASLGYFLTADEP 125 G + V GT+ P A NLE +I I PA +IAVDACLG S+G T P Sbjct: 71 VGITNFQVFGTLDEPVHALNLEEKIQNIQKDNPAS-FIIAVDACLGKSQSIGSITTGMGP 129 Query: 126 LRPAQSVGLNLPAVGHYSLAAIVDVYGPRPYRTLQSTPLHRVMVMAKQIA 175 +P ++ LPAVG + IV++ G + LQ+T L VM MA IA Sbjct: 130 SKPGAAMNKKLPAVGDLHIHGIVNLNGFMEFFVLQNTRLSLVMKMADVIA 179 >ref|NP_653945.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847873.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP29359.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 198 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 12/170 (7%) Query: 15 REQESRKRKKRDASGLI--FFFREI-ASQHPPEQITFLCIGTDRSTGDALGPLTGSQLLE 71 +E ++ + +AS I F I H P I +CIGTDRSTGDALGPL G++L + Sbjct: 13 KETQNVMHQDLEASETISNFLLSHIPIKTHIP--IILVCIGTDRSTGDALGPLVGTKLEQ 70 Query: 72 QGFPH--VSGTMPSPCDADNLEARIAEI----PAGQIVIAVDACLGPPASLGYFLTADEP 125 G + V GT+ P A NLE +I I PA +IAVDACLG S+G T P Sbjct: 71 VGIKNFQVFGTLDEPVHALNLEEKIQNIQKDNPAS-FIIAVDACLGKSQSIGSITTGMGP 129 Query: 126 LRPAQSVGLNLPAVGHYSLAAIVDVYGPRPYRTLQSTPLHRVMVMAKQIA 175 +P ++ LPAVG + IV++ G + LQ+T L VM MA IA Sbjct: 130 SKPGAAMNKKLPAVGDLHIHGIVNLNGFMEFFVLQNTRLSLVMKMADVIA 179 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 280,854,498 Number of extensions: 11572148 Number of successful extensions: 23604 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 23583 Number of HSP's successfully gapped: 16 Length of query: 192 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 73 Effective length of database: 434,140,797 Effective search space: 31692278181 Effective search space used: 31692278181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)