BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0017.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI18827.1| unknown [environmental sequence] 358 8e-98 gb|EAI78196.1| unknown [environmental sequence] 356 3e-97 gb|EAI66825.1| unknown [environmental sequence] 354 1e-96 ref|NP_661736.1| thioredoxin reductase [Chlorobium tepidum TLS] ... 350 3e-95 gb|EAK31807.1| unknown [environmental sequence] 350 3e-95 >gb|EAI18827.1| unknown [environmental sequence] Length = 312 Score = 358 bits (919), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 173/308 (56%), Positives = 227/308 (73%), Gaps = 2/308 (0%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 ++ +IIIG+GPAGLTAAIY RANL P+V EG QPGGQL +VENFPGFP+G+MGP++ Sbjct: 6 IHNTIIIGSGPAGLTAAIYAGRANLKPIVFEGNQPGGQLTITTDVENFPGFPNGVMGPKM 65 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MD R QA+RFGA+ V V+ +P+K+ V G ++T+I+STGA+A+ LG+ Sbjct: 66 MDLFRDQAKRFGAECFFKHVTKVDFSSKPYKVYV-GDEEFLSETVIISTGASARMLGLKE 124 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 E++ +G G+STCATCDG+FF+ K IVVVGGGDSA+EEA FLT+FA KVT++HRRE +AS Sbjct: 125 EEELMGYGISTCATCDGYFFKDKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVT-SGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHH 239 KIM DRV++N + +N++ + S GV+ I + + V+GE+ + GVF IGH+ Sbjct: 185 KIMLDRVKNNPLIDIMVNKSIDSIIGSQKEGVSSIVLNDTVSGEKTTFKCEGVFYGIGHN 244 Query: 240 PNTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDA 299 PNT G I D NGYI+T P +S TNIPGVFACGDVQD Y+QAITAAGSGCMAA+D Sbjct: 245 PNTDLFDGVIDLDDNGYIITKPDSSLTNIPGVFACGDVQDDHYRQAITAAGSGCMAAIDT 304 Query: 300 EKYIESLE 307 EKY+E +E Sbjct: 305 EKYLEDIE 312 >gb|EAI78196.1| unknown [environmental sequence] Length = 310 Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 176/309 (56%), Positives = 227/309 (73%), Gaps = 4/309 (1%) Query: 3 KSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPELMD 62 K IIIG+GPAGLTAA Y ARANL PLV EG QPGGQL +VEN+PGFPDGIMGP+LMD Sbjct: 4 KVIIIGSGPAGLTAATYAARANLEPLVFEGVQPGGQLTITTDVENYPGFPDGIMGPDLMD 63 Query: 63 NMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPGEQ 122 R QA+RFGA+ V V+L PFK+ V T+D++I++TGATAK LG+ E+ Sbjct: 64 KFRDQAKRFGAECYFKHVTKVDLESNPFKVWVADE-TFTSDSIIIATGATAKLLGLESEK 122 Query: 123 DNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRASKI 182 + +G GVS CATCDGFFF+ K++ V+GGGDSA+EEA FLT+FAS+V ++HRR ELRASKI Sbjct: 123 NLMGHGVSACATCDGFFFKDKKVFVIGGGDSAMEEASFLTKFASEVQIIHRRNELRASKI 182 Query: 183 MQDRVRDNEKVAWSLNRTPLEVTSG--DRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHP 240 MQDRV +N K+ N T LE G D GV+ + + + ++G+ E GVF+AIGH P Sbjct: 183 MQDRVLNNPKIHIQWN-TTLEDIKGNVDDGVSAVILKDIISGDIRSEECDGVFLAIGHTP 241 Query: 241 NTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAE 300 NT + D YI T+ +++T++PG+FACGDVQD+ Y+QA+TAAGSGCMAA+DAE Sbjct: 242 NTELFDNFLNLDEKKYICTDDNSTKTSVPGIFACGDVQDSIYRQAVTAAGSGCMAAIDAE 301 Query: 301 KYIESLEHS 309 +Y+ES+E S Sbjct: 302 RYLESIESS 310 >gb|EAI66825.1| unknown [environmental sequence] Length = 314 Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 174/306 (56%), Positives = 224/306 (73%), Gaps = 4/306 (1%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 ++K+IIIG+GPAGLTAAIY RANL P+V EG QPGGQL +VENFPGFPDG+MGP++ Sbjct: 6 IHKTIIIGSGPAGLTAAIYAGRANLKPIVFEGNQPGGQLTITTDVENFPGFPDGVMGPDM 65 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MD R QA++FGA+ V V+ P+K+ V G ++T+I+STGA+A+ LG+ Sbjct: 66 MDLFRDQAKKFGAECHFKHVTKVDFSSTPYKVFV-GEEEFLSETVIISTGASARMLGLKE 124 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 E+ +G G+STCATCDG+FF+ K IVVVGGGDSA+EEA FLT+FA KVT++HRRE +AS Sbjct: 125 EEQLMGYGISTCATCDGYFFKEKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDR--GVNGIKVLNNVTGEEEFIEASGVFVAIGH 238 KIM DRVR+N + +N++ +E G + G++ I + + V+GE E GVF IGH Sbjct: 185 KIMLDRVRNNPLIDIVVNKS-IESIKGTQQDGISSIVLKDTVSGESSTFECEGVFYGIGH 243 Query: 239 HPNTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMD 298 PNT G I + NGYI+T +S TNIPGVFACGDVQD Y+QAITAAGSGCMAA+D Sbjct: 244 TPNTDLFKGMIDLNDNGYIITQSDSSLTNIPGVFACGDVQDDHYRQAITAAGSGCMAAID 303 Query: 299 AEKYIE 304 AEKY+E Sbjct: 304 AEKYLE 309 >ref|NP_661736.1| thioredoxin reductase [Chlorobium tepidum TLS] gb|AAM72078.1| thioredoxin reductase [Chlorobium tepidum TLS] Length = 311 Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 170/302 (56%), Positives = 214/302 (70%) Query: 5 IIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPELMDNM 64 +IIGTGPAG T+AIY RANL PLVIEGPQPGGQL ++ENFPGFP+GI GPELM M Sbjct: 9 VIIGTGPAGYTSAIYTGRANLKPLVIEGPQPGGQLMITTDIENFPGFPEGIPGPELMGRM 68 Query: 65 RKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPGEQDN 124 R+QA RFG +F G + V++ PF L ++ + TLI++TGA AK+LGI E+ Sbjct: 69 REQAARFGVEFQFGSITEVDVSRSPFSLMLDNGQEILARTLIIATGANAKWLGIESEEKY 128 Query: 125 IGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRASKIMQ 184 GRGVS CATCDGFFFR + VVGGGD+A+EEA +LT+FAS+V LVHRREE RASKIM Sbjct: 129 RGRGVSACATCDGFFFRNCRVFVVGGGDTAMEEALYLTKFASEVVLVHRREEFRASKIMS 188 Query: 185 DRVRDNEKVAWSLNRTPLEVTSGDRGVNGIKVLNNVTGEEEFIEASGVFVAIGHHPNTAF 244 R NEK+ LN+ E+ D V GI++ N TGE GVF+AIGH PN Sbjct: 189 LRASKNEKITTMLNQVVDEILGDDMKVTGIRLKNVKTGELTEHACDGVFIAIGHEPNAKL 248 Query: 245 LGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMDAEKYIE 304 GQ+ D GYI+T ++ET++ GVFACGDVQD Y+QA+TA G+GCMAA++AE+++E Sbjct: 249 FKGQLDMDDYGYILTKDHSTETSVKGVFACGDVQDFTYRQAVTAVGTGCMAAIEAERFLE 308 Query: 305 SL 306 S+ Sbjct: 309 SI 310 >gb|EAK31807.1| unknown [environmental sequence] Length = 312 Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 167/309 (54%), Positives = 228/309 (73%), Gaps = 4/309 (1%) Query: 1 MYKSIIIGTGPAGLTAAIYLARANLNPLVIEGPQPGGQLXXXXEVENFPGFPDGIMGPEL 60 ++K+IIIG+GPAGLT+AIY RANL P+V EG QPGGQL +VEN+PGFP+G+MGPE+ Sbjct: 6 IHKTIIIGSGPAGLTSAIYAGRANLKPIVFEGNQPGGQLTITTDVENYPGFPNGVMGPEM 65 Query: 61 MDNMRKQAERFGAKFVTGWVNSVELGERPFKLNVEGMGALTTDTLILSTGATAKYLGIPG 120 MD R QA++FGA+ V V+ +P+K+ V G ++T+I+STGA+A+ LG+ Sbjct: 66 MDLFRDQAKKFGAECFFKHVTKVDFSSKPYKVFV-GDDEFLSETIIISTGASARMLGLKE 124 Query: 121 EQDNIGRGVSTCATCDGFFFRGKEIVVVGGGDSALEEAGFLTRFASKVTLVHRREELRAS 180 E + +G G+STCATCDG+FF+ K IVVVGGGDSA+EEA FLT+FA KVT++HRRE +AS Sbjct: 125 EDELMGYGISTCATCDGYFFKDKNIVVVGGGDSAMEEASFLTKFAKKVTIIHRREVFKAS 184 Query: 181 KIMQDRVRDNEKVAWSLNRTPLEVTSGDR--GVNGIKVLNNVTGEEEFIEASGVFVAIGH 238 KIM DR ++N + +N++ +E +G + GV+ + + + +T ++ GVF IGH Sbjct: 185 KIMLDRAKNNPLIDIIVNKS-IESINGSQKDGVSSVILRDTITEQKSTFNCEGVFYGIGH 243 Query: 239 HPNTAFLGGQITTDANGYIVTNPGTSETNIPGVFACGDVQDTRYKQAITAAGSGCMAAMD 298 +PNT G I + NGYI+T P ++ TNIPGVFACGDVQD Y+QAITAAGSGCM+A+D Sbjct: 244 NPNTELFKGIIDLNDNGYIITKPDSTLTNIPGVFACGDVQDDHYRQAITAAGSGCMSAID 303 Query: 299 AEKYIESLE 307 AEKY+E +E Sbjct: 304 AEKYLEDVE 312 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 467,249,076 Number of extensions: 19560215 Number of successful extensions: 67489 Number of sequences better than 1.0e-05: 1492 Number of HSP's gapped: 65901 Number of HSP's successfully gapped: 1492 Length of query: 313 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 188 Effective length of database: 417,850,203 Effective search space: 78555838164 Effective search space used: 78555838164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)