BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0016.p
         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CGW5|NRDH_LACLA Glutaredoxin-like protein nrdH                    60   1e-08
sp|Q48708|NRDH_LACLC Glutaredoxin-like protein nrdH >gi|1222680|...    59   2e-08
ref|NP_295808.1| glutaredoxin, putative [Deinococcus radiodurans...    58   9e-08
ref|NP_953856.1| glutaredoxin family protein [Geobacter sulfurre...    57   2e-07
ref|NP_231256.1| glutaredoxin, putative [Vibrio cholerae O1 biov...    56   3e-07

>sp|Q9CGW5|NRDH_LACLA Glutaredoxin-like protein nrdH
          Length = 72

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 4  VIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDMGMRAVPVTVIGDFKIV 63
          V VY+  NC  C+ VK +LSE  I+++E NI++  ++ ++V +MG RA PV    DF   
Sbjct: 2  VTVYSKNNCMQCKMVKKWLSEHEIAFDEINIDEQPEFVEKVIEMGFRAAPVITKDDFAFS 61

Query: 64 GMNKTQFDK 72
          G   ++  K
Sbjct: 62 GFRPSELAK 70


>sp|Q48708|NRDH_LACLC Glutaredoxin-like protein nrdH
 emb|CAA63372.1| glutaredoxin-like protein [Lactococcus lactis]
          Length = 72

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 4  VIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDMGMRAVPVTVIGDFKIV 63
          V VY+  NC  C+ VK +LSE  I++ E NI++  ++ ++V +MG RA PV    DF   
Sbjct: 2  VTVYSKNNCMQCKMVKKWLSEHEIAFNEINIDEQPEFVEKVIEMGFRAAPVITKDDFAFS 61

Query: 64 GMNKTQFDK 72
          G   ++  K
Sbjct: 62 GFRPSELAK 70


>ref|NP_295808.1| glutaredoxin, putative [Deinococcus radiodurans]
 pir||F75317 probable glutaredoxin - Deinococcus radiodurans (strain R1)
 gb|AAF11632.1| glutaredoxin, putative [Deinococcus radiodurans]
          Length = 81

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 4  VIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDM--GMRAVPVTVIGD-- 59
          V +YT+T CP C   K  L++KGI+YEE NIEQ++  A+ V  +  G R+VP  V GD  
Sbjct: 2  VKMYTTTWCPDCHAAKRALTQKGIAYEEINIEQDEQAAEYVMSVNGGRRSVPTLVSGDVA 61

Query: 60 FKIVGMNKTQFDKALANV 77
            + G    + D  LA  
Sbjct: 62 HSLSGFRPQKLDAFLAEA 79


>ref|NP_953856.1| glutaredoxin family protein [Geobacter sulfurreducens PCA]
 gb|AAR36206.1| glutaredoxin family protein [Geobacter sulfurreducens PCA]
          Length = 133

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 9/81 (11%)

Query: 3   NVIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVW----DMGM----RAVPV 54
           +VI+YT + CPHC + K++L+++GI +  R ++ +D+Y  ++     DM +    R VP+
Sbjct: 47  DVIIYTLSTCPHCAEAKAYLAKRGIPFTNREVDTDDEYMAELIKIFDDMKVPDERRGVPL 106

Query: 55  TVI-GDFKIVGMNKTQFDKAL 74
            V+ G  ++ G +K + ++A+
Sbjct: 107 FVVAGKTRLQGFDKAKLEEAI 127


>ref|NP_231256.1| glutaredoxin, putative [Vibrio cholerae O1 biovar eltor str.
          N16961]
 pir||B82179 probable glutaredoxin VC1616 [imported] - Vibrio cholerae
          (strain N16961 serogroup O1)
 gb|AAF94770.1| glutaredoxin, putative [Vibrio cholerae O1 biovar eltor str.
          N16961]
          Length = 77

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MENVIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDMGMRAVPVTVIGDF 60
          M+ V++Y    CPHC+  + +L  KGI Y   N +      +++  +G R+VPV  IGD 
Sbjct: 1  MKRVVLYIKDKCPHCKDAQRYLDSKGIKYRLCNAKMERG-RKELDALGARSVPVLKIGDR 59

Query: 61 KIVGMNKTQFDK 72
           ++G N T F++
Sbjct: 60 LMIGWNHTNFER 71


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 108,364,306
Number of extensions: 3597291
Number of successful extensions: 10103
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 10156
Number of HSP's successfully gapped: 10
Length of query: 77
Length of database: 757,237,578
Length adjustment: 47
Effective length of query: 30
Effective length of database: 629,627,925
Effective search space: 18888837750
Effective search space used: 18888837750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)