BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0006.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 385 e-106 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 293 4e-78 pir||S72642 probable ABC-type transport protein xynB - Thermoana... 289 6e-77 dbj|BAA82142.1| ORF2 [Clostridium stercorarium] 239 6e-62 ref|NP_764660.1| maltose/maltodextrin transport permease [Staphy... 206 7e-52 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/298 (61%), Positives = 237/298 (79%), Gaps = 3/298 (1%) Query: 6 LTGKSWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDN 65 +TGK W DR+FD+ PFLNVLAISLNDSVD+VRGGI I+PREFT +N Sbjct: 1 MTGK-WGDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLEN 59 Query: 66 YLKIFTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYI 125 Y IF + LVTGF S LRTV GT+LG+ S++M+AFT+SR DFQ RKFVST + +T+Y Sbjct: 60 YRVIFEYDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYF 119 Query: 126 SGGMIPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDF 185 SGG+IP YML+++L ++N+F VY++PG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDF Sbjct: 120 SGGLIPGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDF 179 Query: 186 TIYLRVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTT-- 243 TI+ R+ILPL P LATI+LF+AVGQWNAWFDTYLYN S+P+LTTLQYELMK+LQ TT Sbjct: 180 TIFWRIILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMS 239 Query: 244 SGNNGDYRSNIASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + + +R S VSPES+KMAI+++ +PIL+VYPF+Q++FVKGMTLGAVKS Sbjct: 240 ASDANAFRGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 139/292 (47%), Positives = 204/292 (69%), Gaps = 4/292 (1%) Query: 13 DRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTF 72 D IFD P +N LA+SLND+ D+VRGGI +PREFTW N+ +F+ Sbjct: 16 DFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYFWPREFTWYNFEHVFSQ 75 Query: 73 SGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIPV 132 S L+ IS LRTV GT + + +M+A+T+SR F +KFV+ +TMY++GG+IP Sbjct: 76 SQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAFVLTMYLNGGLIPT 135 Query: 133 YMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRVI 192 Y+L+++L ++ +F +YI+PGL+ FN+ VIRSFI+GLP + ESAK+DGA +FT + ++ Sbjct: 136 YLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKIDGAGEFTQFFKIA 195 Query: 193 LPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGDYRS 252 LPL P +AT+SLF+AVGQWN+WFD ++YN + P L+TLQYELMK+LQ + + + + Sbjct: 196 LPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKILQNSNASMSSGSAA 255 Query: 253 NIASMAS----NQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 + + + V+P+S++ A+TI+V+VPI+ VYPF+QKYFVKG+TLG VK Sbjct: 256 SAFASSQSGVVETVTPQSVRAAMTIIVSVPIICVYPFLQKYFVKGLTLGGVK 307 >pir||S72642 probable ABC-type transport protein xynB - Thermoanaerobacterium thermosulfurigenes gb|AAB08045.1| XynB [Thermoanaerobacterium thermosulfurigenes] Length = 301 Score = 289 bits (739), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 146/296 (49%), Positives = 207/296 (69%), Gaps = 10/296 (3%) Query: 10 SWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKI 69 S D +FD PF++VLA+S ND++D+VRGGI ++PR+FT NY+ I Sbjct: 10 STEDIVFDTINYILLTIVIIVTLYPFVHVLAVSFNDAIDTVRGGIYLFPRKFTTFNYVSI 69 Query: 70 FTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGM 129 + + ISALR V G++L +I++ ++A+ +SR DF R VS +MY + G+ Sbjct: 70 LSDPEIYNATIISALRAVIGSVLNVIASIIVAYAISRRDFVLRGIVSKIFTYSMYFTSGL 129 Query: 130 IPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYL 189 IP Y+L++DL +MN+F VYI+PG+VSA+N+ V+RS+IDGLP +L ESAK+DGA++ I Sbjct: 130 IPYYLLIRDLHLMNNFLVYILPGIVSAWNIMVVRSYIDGLPASLVESAKIDGASELRIIF 189 Query: 190 RVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTT---TSGN 246 +I PL P LATI+LF+AVGQWN+WFDT L+ +P+L+TLQYEL KVLQ+T T Sbjct: 190 SIIFPLSVPVLATITLFVAVGQWNSWFDTMLFCSMNPNLSTLQYELQKVLQSTQQFTQQA 249 Query: 247 NGD--YRSNIASMASNQVSPESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 + D R+N SN V+PES++ A+T+V VPI+MVYPF+QKYFVKG+T+G+VK Sbjct: 250 SFDMGLRNN-----SNSVTPESIRAAMTVVAVVPIMMVYPFLQKYFVKGLTIGSVK 300 >dbj|BAA82142.1| ORF2 [Clostridium stercorarium] Length = 254 Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 115/252 (45%), Positives = 172/252 (68%), Gaps = 9/252 (3%) Query: 59 REFTWDNYLKIFTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTF 118 + T NY +F + F IS +T+ + L SMLA+T+SR ++ RKF++T Sbjct: 3 EKITLYNYYVVFNMDTIYNAFYISVTKTIVIVVTNLFFTSMLAYTISRKEYIFRKFITTV 62 Query: 119 LAMTMYISGGMIPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAK 178 +TMY + G+IP Y+L+K LG++N+F+VY +P +VSAFN+ V+R++I +P +L ESAK Sbjct: 63 FVLTMYFNAGLIPNYLLIKKLGLLNTFSVYWIPNIVSAFNLIVMRTYIKTIPESLIESAK 122 Query: 179 LDGANDFTIYLRVILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKV 238 +DGA +F IY R++LPL+ P LATI+LF+AVG WN+WFDT+LYN + L+TLQYEL K+ Sbjct: 123 IDGAREFHIYWRIVLPLITPCLATIALFVAVGSWNSWFDTFLYNSARQDLSTLQYELQKL 182 Query: 239 LQTTTS--------GNNGDYRSNIASMAS-NQVSPESLKMAITIVVTVPILMVYPFIQKY 289 L +T + G N R+ + S N +P+S++ AITI +VPIL+VYPF+Q+Y Sbjct: 183 LSSTMTAGTRGAPAGINEAGRAGTSGTGSGNVTTPQSIRAAITIFTSVPILLVYPFLQRY 242 Query: 290 FVKGMTLGAVKS 301 F+ G+ +G+VK Sbjct: 243 FIHGLAIGSVKE 254 >ref|NP_764660.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] gb|AAO04702.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] Length = 302 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 101/271 (37%), Positives = 172/271 (63%), Gaps = 5/271 (1%) Query: 34 PFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTFSGLVTGFKISALRTVAGTLLG 93 P +N+ A++ N VD+ +GGIT YPR+F+ DN+ +IF L+ IS +TV GT+L Sbjct: 34 PMINIFALAFNSGVDAQKGGITFYPRKFSLDNFKEIFKQGTLLNALFISIAKTVIGTILS 93 Query: 94 LISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIPVYMLVKDLGMMNSFAVYIVPGL 153 +I +M A+ ++ R+ +S FL TM S G++P+Y+L+ L + ++F VYI+P L Sbjct: 94 VILTAMAAYVLTIKSLPFRRIISFFLVFTMLFSVGVVPLYILLNQLHLTDTFWVYILPSL 153 Query: 154 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRVILPLLKPALATISLFLAVGQWN 213 S +N+ ++R+F + LP ++ E+A++DG NDF I+ +++LP+ KP +A+I+LF AV QWN Sbjct: 154 YSVYNILIMRTFFNQLPSSVIEAARVDGCNDFQIFWKIVLPMSKPVVASITLFNAVSQWN 213 Query: 214 AWFDTYLYNGS---SPHLTTLQYELMKVLQTTTSGNNGDYRSNIASMASNQVSPESLKMA 270 WF + + P T LQ L K Q + + A + ++ +S++MA Sbjct: 214 DWFTGAFFVRNPNLKPLATVLQDMLTK--QAAIADALKQKSGSYAMLDKLTITGDSMQMA 271 Query: 271 ITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + +++T+P+L ++PF+QK+FVKG+T+G+ K Sbjct: 272 MIVLLTIPVLFLFPFVQKHFVKGITIGSTKE 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,378,280 Number of extensions: 14398449 Number of successful extensions: 55100 Number of sequences better than 1.0e-05: 1184 Number of HSP's gapped: 53827 Number of HSP's successfully gapped: 1184 Length of query: 301 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 176 Effective length of database: 417,850,203 Effective search space: 73541635728 Effective search space used: 73541635728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 125 (52.8 bits)