BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0166.0005.p
         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060070.1| COG3830: ACT domain-containing protein [Clost...    76   3e-13
ref|NP_696380.1| narrowly conserved hypothetical protein with Ac...    75   6e-13
ref|ZP_00120574.1| COG3830: ACT domain-containing protein [Bifid...    74   7e-13
ref|NP_248566.1| M. jannaschii predicted coding region MJ1558 [M...    70   1e-11
ref|NP_987777.1| conserved hypothetical protein [Methanococcus m...    70   1e-11

>ref|ZP_00060070.1| COG3830: ACT domain-containing protein [Clostridium thermocellum
          ATCC 27405]
          Length = 89

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1  LNILDISQTIVQDYFNMMMIVDISAPSKSFEEIVEDLQQVGEEIGVEIKLQHEDIFNIMH 60
          +NILDISQTI+QD F M+M+VDIS     F E+ + L++ G E+G+ +++QHEDIFN MH
Sbjct: 28 VNILDISQTIMQDVFTMVMLVDISKLCVQFAELADRLEKKGVEMGLSVRIQHEDIFNSMH 87

Query: 61 RI 62
          RI
Sbjct: 88 RI 89


>ref|NP_696380.1| narrowly conserved hypothetical protein with Act domain
          [Bifidobacterium longum NCC2705]
 sp|Q8G509|YC0A_BIFLO Hypothetical UPF0237 protein BL1209.1
 gb|AAN25016.1| narrowly conserved hypothetical protein with Act domain
          [Bifidobacterium longum NCC2705]
          Length = 90

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1  LNILDISQTIVQDYFNMMMIVDISAPSKSFEEIVEDLQQVGEEIGVEIKLQHEDIFNIMH 60
          +N+LDISQTI+  YFNMMMIVD +   K F  +V +L+ +G++IGV I+ Q E+IF  MH
Sbjct: 29 VNVLDISQTIIDGYFNMMMIVDYANADKDFGAMVGNLEDLGDDIGVRIRCQREEIFTKMH 88

Query: 61 RI 62
          RI
Sbjct: 89 RI 90


>ref|ZP_00120574.1| COG3830: ACT domain-containing protein [Bifidobacterium longum
           DJO10A]
          Length = 114

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1   LNILDISQTIVQDYFNMMMIVDISAPSKSFEEIVEDLQQVGEEIGVEIKLQHEDIFNIMH 60
           +N+LDISQTI+  YFNMMMIVD +   K F  +V +L+ +G++IGV I+ Q E+IF  MH
Sbjct: 53  VNVLDISQTIIDGYFNMMMIVDYANADKDFGAMVGNLEDLGDDIGVRIRCQREEIFTKMH 112

Query: 61  RI 62
           RI
Sbjct: 113 RI 114


>ref|NP_248566.1| M. jannaschii predicted coding region MJ1558 [Methanococcus
          jannaschii]
 sp|Q58953|YF58_METJA Hypothetical UPF0237 protein MJ1558
 gb|AAB99581.1| M. jannaschii predicted coding region MJ1558 [Methanococcus
          jannaschii]
          Length = 90

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 2  NILDISQTIVQDYFNMMMIVDISAPSKSFEEIVEDLQQVGEEIGVEIKLQHEDIFNIMHR 61
          NILDISQTI+ + F M+M+VDIS     F  + ++L++ GEE+GV++ +QHEDIF  MHR
Sbjct: 30 NILDISQTIMDNLFAMIMLVDISNAKVDFATLKKELEKAGEELGVQVIVQHEDIFKYMHR 89

Query: 62 I 62
          I
Sbjct: 90 I 90


>ref|NP_987777.1| conserved hypothetical protein [Methanococcus maripaludis S2]
 emb|CAF30213.1| conserved hypothetical protein [Methanococcus maripaludis]
          Length = 90

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 2  NILDISQTIVQDYFNMMMIVDISAPSKSFEEIVEDLQQVGEEIGVEIKLQHEDIFNIMHR 61
          NI+DI QTI++D F M+M+VDIS  S  F E+   L+++G EIGV+I +QHE+IF  MHR
Sbjct: 30 NIVDIRQTIMEDLFTMIMLVDISKISSDFSELNVALEKLGSEIGVKINVQHENIFKYMHR 89

Query: 62 I 62
          I
Sbjct: 90 I 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.140    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 81,397,695
Number of extensions: 2373498
Number of successful extensions: 10892
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 10893
Number of HSP's successfully gapped: 24
Length of query: 62
Length of database: 757,237,578
Length adjustment: 34
Effective length of query: 28
Effective length of database: 664,924,212
Effective search space: 18617877936
Effective search space used: 18617877936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)