BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0166.0004.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00019690.1| hypothetical protein [Chloroflexus aurantiacus] 196 2e-48 ref|ZP_00087058.1| COG3706: Response regulator containing a CheY... 155 3e-36 ref|ZP_00183087.1| hypothetical protein Exigu156401 [Exiguobacte... 148 4e-34 ref|NP_966031.1| response regulator/GGDEF domain protein [Wolbac... 147 4e-34 gb|AAD28578.1| putative response regulator CelR2 [Rhizobium legu... 147 9e-34 >ref|ZP_00019690.1| hypothetical protein [Chloroflexus aurantiacus] Length = 940 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 202/362 (55%), Gaps = 22/362 (6%) Query: 189 IPIIIVSGEHSKDIQMYAYSLGVMDYLPKPLDIDLFLVLIKNRFELKREWQESVIVDELT 248 +PI+ +SGE + +Q+ A + G D+L KP++++ + + +R R + ++ D LT Sbjct: 328 VPIVFLSGETDRSVQLAALARGGDDFLTKPINLEHLIAAVSSRIRRARTMRSLMVRDGLT 387 Query: 249 GAFNRKYFNQTMKRLVSDFRRTGRIFSVALMDLDHFKHVNDTYGHLVGDEVLQTFSGAVR 308 G FN + R V+ RR + +VAL+D+DHFK VND YGH VGD VL++ + +R Sbjct: 388 GLFNHSVTQDLLMREVARARRNAQPLAVALLDIDHFKQVNDRYGHQVGDRVLKSLARLLR 447 Query: 309 RSIRVEDTFCRFGGEEFALFMPNTDSASALLVVQRIQQEFAARSFTAKKEQFHVTFSAGI 368 + +R D R+GGEEF + MP+T + SA +V+ +++ FA + E VTFSAG+ Sbjct: 448 QRLRATDVIGRYGGEEFLIVMPDTRAGSAAMVIDSLRERFAHIEHQREGEPLRVTFSAGV 507 Query: 369 TEVREALHEPDRLIGEADQALYASKAEGRNRTTLYTKQLGTGQEE-------SLLN---- 417 E L + LI +AD ALY +K GRN+ + L + S LN Sbjct: 508 AEWHMGL-DAGALIEKADAALYQAKHNGRNQVVVADVSLTQPPQRHALPITPSRLNQAPL 566 Query: 418 VIVIDDDALIRRIVTQHFAVWEPAGIGQVKVSSYAGGPQFLESDWYAEGGKYIILLDGIM 477 V+V+DDD I R+ +W +V+V+ G + L+ A+GG I L+D +M Sbjct: 567 VLVVDDDPNICRL----LQIWLMDAGYRVEVAQ--SGMEALQR--IAQGGVDIALIDILM 618 Query: 478 PELDGLEVLERIRSSYPEVNILVIMLTGRNNQRDIIHALQMGADDYVVKPFHLPELLSRI 537 PE+ G++VL+++R + E VIM T +++ ++A++ GADDY+ KP ELL + Sbjct: 619 PEMSGIDVLDQVRRNGAEPA--VIMTTAFGSEQIAVNAIRHGADDYLRKPIDRQELLVVL 676 Query: 538 ER 539 ER Sbjct: 677 ER 678 >ref|ZP_00087058.1| COG3706: Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudomonas fluorescens PfO-1] Length = 556 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/254 (35%), Positives = 144/254 (56%), Gaps = 7/254 (2%) Query: 172 SGIDVLKQIIGKAKKERIPIIIVSGEHSKDIQMYAYSLGVMDYLPKPLDIDLFLVLIKNR 231 +G ++ K I + +PII +S E D Q+ A S G D+L KP+ + ++NR Sbjct: 306 TGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNR 365 Query: 232 FELKREWQESVIVDELTGAFNRKYFNQTMKRLVSDFRRTGRIFSVALMDLDHFKHVNDTY 291 R + ++ D LTG +N + Q ++ RR + S A++D+DHFK VND++ Sbjct: 366 AARARNLKARMVRDSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSH 425 Query: 292 GHLVGDEVLQTFSGAVRRSIRVEDTFCRFGGEEFALFMPNTDSASALLVVQRIQQEFAAR 351 GH +GD V+++ + +++ +R D R+GGEEFA+ MP+TD +A V+ I+Q FA Sbjct: 426 GHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDIEAAHKVLDEIRQRFAEI 485 Query: 352 SFTAKKEQFHVTFSAGITEVREALHEPDRLI--GEADQALYASKAEGRNR--TTLYTKQL 407 + A+ + TFSAG+ E+ + + D L+ +AD+ALY +K EGRNR T +KQ Sbjct: 486 HYPAQPQDLWCTFSAGVVEMHD---DSDSLMMASQADEALYRAKGEGRNRVQTARDSKQS 542 Query: 408 GTGQEESLLNVIVI 421 T +S +VI + Sbjct: 543 ATFSSDSTQSVITV 556 >ref|ZP_00183087.1| hypothetical protein Exigu156401 [Exiguobacterium sp. 255-15] Length = 506 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 4/288 (1%) Query: 131 RESLEKQSYYVSIALSAERGLKIFYESKXXXXXXXXXXXXQSGIDVLKQIIGKAKKERIP 190 +++LE + Y S E L++ Y+ + +LK++I K + IP Sbjct: 114 KKALEHERYMTRFFGSIEDTLEVGYDLHVDAMLIDYEIIRMTEDTLLKKLIRKLETAFIP 173 Query: 191 IIIVSGEHSKDIQMYAYSLGVMDYLPKPLDIDLFLVLIKNRFELKREWQESVIVDELTGA 250 +I++ G + ++ Y+LG DY + + ID + ++ R S++VDELTGA Sbjct: 174 LILI-GPNDPTVRQVCYALGADDYWDETVGIDERKIRLQRLLRKLRAVSSSILVDELTGA 232 Query: 251 FNRKYFNQTMKRLVSDFRRTGRIFSVALMDLDHFKHVNDTYGHLVGDEVLQTFSGAVRRS 310 FNRKY +R S R ++F++A+ DLDHFK +ND +GH GD VL + +++ Sbjct: 233 FNRKYLQNAYRRRTSRLERDHQLFALAIFDLDHFKRINDLHGHPTGDLVLTELAALTKQA 292 Query: 311 IRVEDTFCRFGGEEFALFMPNTDSASALLVVQRIQQEFAARSFTAKKEQFHVTFSAGITE 370 +R +D RFGGEEF + +S A +++R++ +F VT S G+T Sbjct: 293 LRQDDELIRFGGEEFMVLFSADNSKHAAEMMERVRSRIERHTF---PNGLKVTVSIGLTI 349 Query: 371 VREALHEPDRLIGEADQALYASKAEGRNRTTLYTKQLGTGQEESLLNV 418 + + L + + + EAD+ALY +K GRN+ LY + E ++ V Sbjct: 350 IDDVLMDLEEMTSEADEALYQAKRNGRNQVILYATATAKEKLEVVIKV 397 >ref|NP_966031.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila melanogaster] gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 460 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 154/297 (51%), Gaps = 15/297 (5%) Query: 117 ILIIDDDVELVAFLRESLEKQSYYVSIALSAERGLKIFYESKXXXXXXXXXXXXQSGIDV 176 +L+ID+DV + L+++ + I LK+ E+ G+ + Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218 Query: 177 LKQIIGKAKKERIPIIIVSGEHSKDIQMYAYSLGVMDYLPKPLDIDLFLVLIKNRFELKR 236 + K + PI+I+S ++ K+ + A +G DYL PLD + + ++ + KR Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKRKR 278 Query: 237 EWQESV-----------IVDELTGAFNRKYFNQTMKRLVSDFRRTGRIFSVALMDLDHFK 285 +Q+++ I D LT +NR+YF+ ++ +V D R S+ ++D+D+FK Sbjct: 279 -YQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFK 337 Query: 286 HVNDTYGHLVGDEVLQTFSGAVRRSIRVEDTFCRFGGEEFALFMPNTDSASALLVVQRIQ 345 VND++GH GDE+L+ + +IRV D RFGGEEF + MP+T+ + A + +RI+ Sbjct: 338 IVNDSFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIR 397 Query: 346 QEFAARSFT-AKKEQFH-VTFSAGITEVREA-LHEPDRLIGEADQALYASKAEGRNR 399 + A + F A K H VT S GI E++E+ L I AD+ LY +K GRNR Sbjct: 398 KIIAKKPFILADKNTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLYKAKNSGRNR 454 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 48/81 (59%) Query: 461 DWYAEGGKYIILLDGIMPELDGLEVLERIRSSYPEVNILVIMLTGRNNQRDIIHALQMGA 520 D A+ IILLD +MP+++G EV + ++S +I +IM+T ++ D + + GA Sbjct: 40 DLVAKQQPDIILLDIMMPKMNGFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGA 99 Query: 521 DDYVVKPFHLPELLSRIERLA 541 DD++ KP + L SRI+ L Sbjct: 100 DDFLTKPINETALSSRIKSLT 120 >gb|AAD28578.1| putative response regulator CelR2 [Rhizobium leguminosarum] Length = 457 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 12/223 (5%) Query: 189 IPIIIVSGEHSKDIQMYAYSLGVMDYLPKPLDIDLFLVLIKNRFELKR----------EW 238 +PI+I++ + + ++ + A LGV DY+ +P+D + + + KR + Sbjct: 229 LPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRKRYNDRLRASVKQT 288 Query: 239 QESVIVDELTGAFNRKYFNQTMKRLVSDFRRTGRIFSVALMDLDHFKHVNDTYGHLVGDE 298 E + D LTG +NR+Y + + L + GR SV + D+D FKHVNDTYGH GDE Sbjct: 289 IELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVNDTYGHDGGDE 348 Query: 299 VLQTFSGAVRRSIRVEDTFCRFGGEEFALFMPNTDSASALLVVQRIQQEFAARSFTAKK- 357 VL+ FS VR +IR D CR+GGEEF + MP+T A V +R++ + F K Sbjct: 349 VLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIESAPFMLKHS 408 Query: 358 -EQFHVTFSAGITEVREALHEPDRLIGEADQALYASKAEGRNR 399 E +VT S GI ++ P +L+ +AD ALY +K GRNR Sbjct: 409 GEALNVTASFGIASRIASVLTPGQLMKQADLALYEAKNTGRNR 451 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 48/71 (67%) Query: 470 IILLDGIMPELDGLEVLERIRSSYPEVNILVIMLTGRNNQRDIIHALQMGADDYVVKPFH 529 +ILLD +MP +DG EV ER+++S +I V+M+T + D + L+ GADD++ KP + Sbjct: 49 LILLDIMMPGIDGFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVN 108 Query: 530 LPELLSRIERL 540 +L+SR++ L Sbjct: 109 DLQLISRVKSL 119 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 781,358,232 Number of extensions: 32706085 Number of successful extensions: 100884 Number of sequences better than 1.0e-05: 4282 Number of HSP's gapped: 99873 Number of HSP's successfully gapped: 4368 Length of query: 546 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 415 Effective length of database: 401,559,609 Effective search space: 166647237735 Effective search space used: 166647237735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)