BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0012.p
         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAB68011.1| unknown [environmental sequence]                        69   5e-11
ref|NP_691149.1| RNA polymerase ECF-type sigma factor [Oceanobac...    66   2e-10
gb|EAD88917.1| unknown [environmental sequence]                        65   3e-10
gb|EAI96497.1| unknown [environmental sequence]                        65   4e-10
gb|EAD34027.1| unknown [environmental sequence]                        65   4e-10

>gb|EAB68011.1| unknown [environmental sequence]
          Length = 194

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 50/74 (67%)

Query: 8  ETKIARIQAGEVYIFADIIDTYQNRIYKYCLRLLSNREEAEDAVQDIMLKVFEKVRYYQP 67
          E  I+R Q+G+   + ++++ Y++RIY +  + L + EEAED VQ+ M+K++EK  YY+ 
Sbjct: 14 EELISRFQSGDEGAYIELVNRYRDRIYNFVFQFLGDIEEAEDVVQNTMIKLYEKKHYYKE 73

Query: 68 KGSFTSWLYKVAYN 81
             F++W+Y +A N
Sbjct: 74 IAKFSTWIYTIARN 87


>ref|NP_691149.1| RNA polymerase ECF-type sigma factor [Oceanobacillus iheyensis
          HTE831]
 dbj|BAC12184.1| RNA polymerase ECF-type sigma factor (sigma-W) [Oceanobacillus
          iheyensis HTE831]
          Length = 187

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 48/72 (66%)

Query: 10 KIARIQAGEVYIFADIIDTYQNRIYKYCLRLLSNREEAEDAVQDIMLKVFEKVRYYQPKG 69
          KI +++ G+   FA+++  YQN+I+++C R+L N+ EAED  Q+  ++ +  +  +  K 
Sbjct: 8  KIKQVKKGDQSAFAEVVSFYQNKIFQHCYRMLGNKHEAEDIAQEAFIRAYINIDSFDEKR 67

Query: 70 SFTSWLYKVAYN 81
           F++WLY++A N
Sbjct: 68 KFSTWLYRIATN 79


>gb|EAD88917.1| unknown [environmental sequence]
          Length = 155

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 48/71 (67%)

Query: 11 IARIQAGEVYIFADIIDTYQNRIYKYCLRLLSNREEAEDAVQDIMLKVFEKVRYYQPKGS 70
          I+R QAG+   + ++++ Y++++  +  + L + E+AED VQD ML+++EK  YY+    
Sbjct: 2  ISRFQAGDERAYVELVNRYKDKLLNFVFQFLGDIEQAEDVVQDTMLRLYEKKHYYKEIAK 61

Query: 71 FTSWLYKVAYN 81
          F++W+Y +A N
Sbjct: 62 FSTWIYTIARN 72


>gb|EAI96497.1| unknown [environmental sequence]
          Length = 203

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)

Query: 8   ETKIARIQAGEVYIFADIIDTYQNRIYKYCLRLLSNREEAEDAVQDIMLKVFEKVRYYQP 67
           E  I+R Q G+   + ++++ Y++R+  +  + L + E+AED VQD ML+++EK  YY+ 
Sbjct: 24  EELISRFQNGDERAYVELVNRYKDRLLNFVFQFLGDIEQAEDVVQDTMLRLYEKKHYYKE 83

Query: 68  KGSFTSWLYKVAYNHCXXXXXXXXXXXRSAACLAGRLRQ-RAPNLQ-------------Q 113
              F++W+Y +A N              +      + RQ   P +Q              
Sbjct: 84  IAKFSTWIYTIARNLANTELRKRKRRKTTYLSQLSKERQFEIPAIQDDVDQSLQNEFIND 143

Query: 114 RTPCSVNRSPRHLKC 128
           R   ++N  P H K 
Sbjct: 144 RIQSAINNLPEHFKV 158


>gb|EAD34027.1| unknown [environmental sequence]
          Length = 194

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%)

Query: 6  SIETKIARIQAGEVYIFADIIDTYQNRIYKYCLRLLSNREEAEDAVQDIMLKVFEKVRYY 65
          S E  I R Q G+   F ++++ Y+++++ +    L + E+AED VQD M+K++EK  YY
Sbjct: 11 SDEQLIKRFQLGDELAFIELVNRYRDKLHNFIYHFLGDIEQAEDVVQDTMIKLYEKKHYY 70

Query: 66 QPKGSFTSWLYKVAYN 81
          +    F++W+Y +A N
Sbjct: 71 KQVAKFSTWIYTIARN 86


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 156,864,123
Number of extensions: 4841428
Number of successful extensions: 15258
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 15316
Number of HSP's successfully gapped: 77
Length of query: 128
Length of database: 757,237,578
Length adjustment: 91
Effective length of query: 37
Effective length of database: 510,163,569
Effective search space: 18876052053
Effective search space used: 18876052053
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)