BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0013.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244919.1| GTP-binding protein [Bacillus halodurans] >gi|2... 562 e-159 ref|NP_391972.1| similar to hypothetical proteins [Bacillus subt... 553 e-156 ref|NP_835130.1| GTP-binding protein [Bacillus cereus ATCC 14579... 548 e-155 ref|NP_981918.1| GTP-binding protein YchF [Bacillus cereus ATCC ... 548 e-155 ref|NP_847870.1| GTP-binding protein YchF [Bacillus anthracis st... 547 e-154 >ref|NP_244919.1| GTP-binding protein [Bacillus halodurans] pir||C84156 GTP-binding protein BH4051 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07770.1| GTP-binding protein [Bacillus halodurans] Length = 366 Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/366 (73%), Positives = 317/366 (86%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MAL GIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPD RL KLTELV P Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDPRLQKLTELVNP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPTAFEF DIAG+V GASKGEGLGN+FL+HIR+VDAI HVVRCF DEN+THV G V+ Sbjct: 61 KKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFDDENITHVSGSVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DI INLELILADLES++KR R +K K DK+ V E+EVLE++K+A +KPARS Sbjct: 121 PIRDISVINLELILADLESVDKRFSRVQKLAKTKDKEAVAELEVLEKLKDAFENEKPARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 +E T++++ IV+ LHLLT KPVLY ANV ED+V + D+NP+VQ+V+ FA EN+EV+ +S Sbjct: 181 IEFTEEQQKIVKGLHLLTSKPVLYVANVSEDDVLSPDDNPFVQKVKAFAAEENSEVIVVS 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E EIAEL+GE+KAMFLEELG+QESGL++LI+AAY LLGL TYFTAG QEVRAWT RK Sbjct: 241 AKIEEEIAELDGEEKAMFLEELGIQESGLDQLIRAAYSLLGLQTYFTAGEQEVRAWTFRK 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 GTKAP AAG+IH+DFE+GFIRAE V+Y+DL+ AGSM AKERG++RLEGKEY+VQDGDV+ Sbjct: 301 GTKAPQAAGIIHSDFEKGFIRAETVSYNDLVEAGSMAVAKERGKVRLEGKEYVVQDGDVI 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >ref|NP_391972.1| similar to hypothetical proteins [Bacillus subtilis] sp|P37518|YYAF_BACSU Hypothetical GTP-binding protein yyaF pir||S66016 probable GTP-binding protein yyaF - Bacillus subtilis dbj|BAA05222.1| unknown [Bacillus subtilis] emb|CAB16129.1| yyaF [Bacillus subtilis subsp. subtilis str. 168] Length = 366 Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/366 (72%), Positives = 311/366 (84%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 MAL AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPD+RL KLTELV P Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDDRLQKLTELVNP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPTAFEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI HVVR F D+N+THV GKV+ Sbjct: 61 KKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DI+TINLELILAD+E++EKRI R K K DK V E E+L ++KEA +KPARS Sbjct: 121 PIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVFEFEILSKLKEAFESEKPARS 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE T++++ +V+ LHLLT KP+LY ANV EDEVA N V ++RE+A ENAEV+ + Sbjct: 181 VEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAEVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAELEGE+K MFLEELG+QESGL++LIKA+Y LLGL TYFTAG QEVRAWT +K Sbjct: 241 AKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRAWTFKK 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AG+IH+DFERGFIRAE VAY+DLLA G M GAKE G++RLEGKEY+VQDGDV+ Sbjct: 301 GMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVVQDGDVI 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >ref|NP_835130.1| GTP-binding protein [Bacillus cereus ATCC 14579] gb|AAP12331.1| GTP-binding protein [Bacillus cereus ATCC 14579] Length = 366 Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust. Identities = 263/366 (71%), Positives = 311/366 (84%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 M L AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL+KLTELV+P Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPT FEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI VVRCF DEN+THV GKV+ Sbjct: 61 KKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DI+TINLELILADLES++KRIER K + DK+ V E E+L R+KEA E KPAR+ Sbjct: 121 PIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYEHEILVRLKEAFEEGKPART 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE T+++ IV+ LHLLT K +LY ANV ED++ EN YVQ V+EFA EN++V+ + Sbjct: 181 VEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAEL+ E+K +FLEELG++ESGL++LI+AAY LLGL TYFTAGVQEVRAWT ++ Sbjct: 241 AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQ 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AGVIHTDFERGFIRAE V+YDDL+ GSM AKE G++RLEGKEY+V+DGDVM Sbjct: 301 GMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVM 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >ref|NP_981918.1| GTP-binding protein YchF [Bacillus cereus ATCC 10987] gb|AAS44526.1| GTP-binding protein YchF [Bacillus cereus ATCC 10987] Length = 366 Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/366 (72%), Positives = 311/366 (84%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 M L AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL+KLTELV+P Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPT FEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI VVRCF DEN+THV GKV+ Sbjct: 61 KKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DI+TINLELILADLES++KRIER K + DK+ V E E+L R+KEA E KPAR+ Sbjct: 121 PIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYEHEILVRLKEAFEEGKPART 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE T+++ IV+ LHLLT K +LY ANV ED+V EN YVQ V+EFA EN+EV+ + Sbjct: 181 VEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSEVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAEL+ E+K +FLEELG++ESGL++LI+AAY LLGL TYFTAGVQEVRAWT ++ Sbjct: 241 AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQ 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AGVIHTDFERGFIRAE V+Y+DL+ GSM AKE G++RLEGKEY+V+DGDVM Sbjct: 301 GMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVM 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 >ref|NP_847870.1| GTP-binding protein YchF [Bacillus anthracis str. Ames] gb|AAP29356.1| GTP-binding protein YchF [Bacillus anthracis str. Ames] Length = 366 Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/366 (71%), Positives = 311/366 (84%) Query: 1 MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVVEVPDERLDKLTELVQP 60 M L AGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVG+VEVPDERL+KLTELV+P Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIVEVPDERLNKLTELVEP 60 Query: 61 NKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENVTHVDGKVN 120 KTVPT FEF DIAG+V+GASKGEGLGNKFL+HIR+VDAI VVRCF DEN+THV GKV+ Sbjct: 61 KKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKVD 120 Query: 121 PVSDIQTINLELILADLESLEKRIERSRKNIKGGDKKYVQEVEVLERIKEALYEDKPARS 180 P+ DI+TINLELILADLES++KRIER K + DK+ V E E+L R+KEA E KPAR+ Sbjct: 121 PIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVYEHEILVRLKEAFEEGKPART 180 Query: 181 VELTDDERLIVRDLHLLTLKPVLYAANVGEDEVAAADENPYVQQVREFAIAENAEVVPIS 240 VE T+++ IV+ LHLLT K +LY ANV ED+V EN YVQ V+EFA EN++V+ + Sbjct: 181 VEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQVIVVC 240 Query: 241 AKVEAEIAELEGEDKAMFLEELGLQESGLNRLIKAAYKLLGLYTYFTAGVQEVRAWTIRK 300 AK+E+EIAEL+ E+K +FLEELG++ESGL++LI+AAY LLGL TYFTAGVQEVRAWT ++ Sbjct: 241 AKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAWTFKQ 300 Query: 301 GTKAPGAAGVIHTDFERGFIRAEVVAYDDLLAAGSMNGAKERGQLRLEGKEYLVQDGDVM 360 G KAP AGVIHTDFERGFIRAE V+Y+DL+ GSM AKE G++RLEGKEY+V+DGDVM Sbjct: 301 GMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVKDGDVM 360 Query: 361 HFRFNV 366 HFRFNV Sbjct: 361 HFRFNV 366 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 522,620,576 Number of extensions: 21676898 Number of successful extensions: 83487 Number of sequences better than 1.0e-05: 1586 Number of HSP's gapped: 81740 Number of HSP's successfully gapped: 1586 Length of query: 366 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 239 Effective length of database: 412,420,005 Effective search space: 98568381195 Effective search space used: 98568381195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)