BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0012.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_464151.1| similar to unknown proteins [Listeria monocytog... 155 4e-37 ref|ZP_00184384.1| hypothetical protein Exigu007901 [Exiguobacte... 143 1e-33 ref|NP_469976.1| similar to unknown proteins [Listeria innocua] ... 130 6e-30 ref|ZP_00062966.1| COG0454: Histone acetyltransferase HPA2 and r... 129 2e-29 ref|NP_391909.1| similar to hypothetical proteins [Bacillus subt... 122 3e-27 >ref|NP_464151.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AH1152 hypothetical protein lmo0624 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98702.1| lmo0624 [Listeria monocytogenes] Length = 147 Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 101/142 (71%), Gaps = 3/142 (2%) Query: 15 FLSQSTRDYAEDKIKAGSWDVETAMQLSQDEMTRFLPEGLNTEGAYLYSIVETETDTQAG 74 FL+ + DYA++K++AG+WD E ++ SQD + L +G+ T YLYSI+ E + G Sbjct: 9 FLTTAITDYAKEKVEAGTWDEEESLAKSQDSFNKLLYDGITTPNEYLYSIISGE---KIG 65 Query: 75 YIWFNVSEGRNGREAFIYDFYVFEAFQGKGYGKQTLLALDEEARKLKITRIGLHVFGQNN 134 YIWF+V E R+G+ AFIYDF +FEAF+GKG+G +TL ALD A++++IT+IGLHVF N Sbjct: 66 YIWFHVDETRSGKHAFIYDFVIFEAFRGKGFGTKTLAALDVLAKEMQITKIGLHVFAHNQ 125 Query: 135 RAFELYKKAGFAVTDITMSKDL 156 A LY K GF TDITM+K L Sbjct: 126 TAIGLYNKVGFQNTDITMAKYL 147 >ref|ZP_00184384.1| hypothetical protein Exigu007901 [Exiguobacterium sp. 255-15] Length = 151 Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 95/150 (63%) Query: 7 MDETTFQFFLSQSTRDYAEDKIKAGSWDVETAMQLSQDEMTRFLPEGLNTEGAYLYSIVE 66 M E + +L ++ ++YAE+K+KAG+W A+ S E + LP+G+ T+ YL+SIV+ Sbjct: 1 MTEAAYAAYLPEAIKEYAEEKVKAGTWAEVEALDRSAAEYGQLLPDGIQTKQHYLFSIVD 60 Query: 67 TETDTQAGYIWFNVSEGRNGREAFIYDFYVFEAFQGKGYGKQTLLALDEEARKLKITRIG 126 G IWF +SE +GR AFI+DF + E QGKGYG+Q + L++ AR++ I +I Sbjct: 61 DPEQPPVGMIWFQLSESTHGRTAFIFDFKIEEGHQGKGYGRQAMEVLEQVARRMNIKKIK 120 Query: 127 LHVFGQNNRAFELYKKAGFAVTDITMSKDL 156 LHVF N RA LY+ GF TD+ M+K L Sbjct: 121 LHVFAHNTRAIHLYETTGFVTTDLHMTKTL 150 >ref|NP_469976.1| similar to unknown proteins [Listeria innocua] pir||AI1511 hypothetical protein homolog lin0633 [imported] - Listeria innocua (strain Clip11262) emb|CAC95865.1| lin0633 [Listeria innocua] Length = 143 Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 7/140 (5%) Query: 15 FLSQSTRDYAEDKIKAGSWDVETAMQLSQDEMTRFLPEGLNTEGAYLYSIVETETDTQAG 74 FL+ + DYA +KI AG+W E A+ S+ + L +G+ T +LYSI TD + G Sbjct: 9 FLTTAIPDYAAEKIAAGTWSKEEALTNSKASFNKLLFDGITTPNEHLYSIF---TDQKIG 65 Query: 75 YIWFNVSEGRNGREAFIYDFYVFEAFQGKGYGKQTLLALDEEARKLKITRIGLHVFGQNN 134 Y+WF+V E + AFIYDF +FE F+GKG+G +TL ALD A+++ IT+I LHVF N Sbjct: 66 YLWFHVDE----KHAFIYDFVIFETFRGKGFGTKTLEALDVLAKEMGITKIELHVFAHNQ 121 Query: 135 RAFELYKKAGFAVTDITMSK 154 A +LY K GF TDITM+K Sbjct: 122 TAIKLYDKVGFKNTDITMAK 141 >ref|ZP_00062966.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 153 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 3/156 (1%) Query: 1 MIRLVQMDETTFQFFLSQSTRDYAEDKIKAGSWDVETAMQLSQDEMTRFLPEGLNTEGAY 60 M+RL +M T F ++S+S ++YA +K++AGSW E ++ ++ R LP+GLNT + Sbjct: 1 MLRLEKMTATHFDDYMSRSIKEYALEKVQAGSWTQEDSLGNAKLTYDRLLPDGLNTPDNF 60 Query: 61 LYSIVETETDTQAGYIWFNVSEGRNGREAFIYDFYVFEAFQGKGYGKQTLLALDEEARKL 120 L+SI+ D GYIW ++ N AFI+DF +++ +Q G+G Q + +A+ L Sbjct: 61 LFSIIND--DNVIGYIWLG-ADSENKNIAFIFDFEIYDTYQNNGFGSQAIALASTKAKAL 117 Query: 121 KITRIGLHVFGQNNRAFELYKKAGFAVTDITMSKDL 156 T IGLHVFG N+RA +Y+K GF +TDI M K L Sbjct: 118 GFTSIGLHVFGTNSRAIHVYEKTGFEITDIKMQKKL 153 >ref|NP_391909.1| similar to hypothetical proteins [Bacillus subtilis] pir||B70090 conserved hypothetical protein yycN - Bacillus subtilis emb|CAB16066.1| yycN [Bacillus subtilis subsp. subtilis str. 168] Length = 156 Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 2 IRLVQMDETTFQFFLSQSTRDYAEDKIKAGSWDVETAMQLSQDEMTRFLPEGLNTEGAYL 61 I L M F+ +L+ +T+ YAE+K+KAG+W E A LS+ T LP GL T +L Sbjct: 3 IMLTPMQTEEFRSYLTYTTKHYAEEKVKAGTWLPEDAQLLSKQVFTDLLPRGLETPHHHL 62 Query: 62 YSIVETETDTQAGYIWFNVSEGRNGREAFIYDFYVFEAFQGKGYGKQTLLALDEEARKLK 121 +S+ E D G++W + +EAFIYDF ++E ++GKGY KQ L ALD+ AR + Sbjct: 63 WSLKLNEKDI-VGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMG 121 Query: 122 ITRIGLHVFGQNNRAFELYKKAGFAVTDITMSKDL 156 I ++ LHVF N A +LY++ GF TD+ MSK L Sbjct: 122 IRKLSLHVFAHNQTARKLYEQTGFQETDVVMSKKL 156 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 214,963,996 Number of extensions: 8337301 Number of successful extensions: 19861 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 19898 Number of HSP's successfully gapped: 14 Length of query: 156 Length of database: 757,237,578 Length adjustment: 114 Effective length of query: 42 Effective length of database: 447,716,292 Effective search space: 18804084264 Effective search space used: 18804084264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)